View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5697_high_7 (Length: 350)

Name: NF5697_high_7
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5697_high_7
NF5697_high_7
[»] chr6 (11 HSPs)
chr6 (210-350)||(9832913-9833051)
chr6 (12-120)||(9833265-9833373)
chr6 (120-217)||(9833082-9833180)
chr6 (148-192)||(2455838-2455882)
chr6 (148-215)||(2460124-2460193)
chr6 (148-193)||(27909635-27909680)
chr6 (150-187)||(31583709-31583746)
chr6 (148-192)||(8420195-8420239)
chr6 (146-215)||(9027604-9027675)
chr6 (148-192)||(9667983-9668027)
chr6 (148-192)||(34939772-34939816)
[»] chr4 (7 HSPs)
chr4 (148-192)||(6987739-6987783)
chr4 (145-215)||(27725239-27725311)
chr4 (148-192)||(11264329-11264373)
chr4 (148-192)||(24929521-24929565)
chr4 (134-181)||(28406926-28406973)
chr4 (148-215)||(27123325-27123394)
chr4 (144-193)||(43412385-43412434)
[»] chr1 (6 HSPs)
chr1 (148-192)||(35017604-35017648)
chr1 (148-187)||(43333709-43333748)
chr1 (141-187)||(30259489-30259535)
chr1 (153-186)||(35669005-35669038)
chr1 (150-191)||(39347966-39348007)
chr1 (155-187)||(17420238-17420270)
[»] chr7 (1 HSPs)
chr7 (141-192)||(27626121-27626172)
[»] chr5 (5 HSPs)
chr5 (152-186)||(42582528-42582562)
chr5 (133-192)||(18875374-18875433)
chr5 (148-192)||(19138715-19138759)
chr5 (144-192)||(35963265-35963313)
chr5 (148-192)||(41052896-41052940)
[»] chr8 (2 HSPs)
chr8 (148-191)||(6875266-6875309)
chr8 (143-172)||(7039833-7039862)
[»] chr3 (5 HSPs)
chr3 (148-187)||(43397855-43397894)
chr3 (152-215)||(37273166-37273231)
chr3 (150-187)||(29771868-29771905)
chr3 (147-192)||(49465934-49465979)
chr3 (148-192)||(43115084-43115128)
[»] chr2 (6 HSPs)
chr2 (141-217)||(1742003-1742081)
chr2 (148-192)||(1939330-1939374)
chr2 (148-192)||(16947054-16947098)
chr2 (148-192)||(17017719-17017763)
chr2 (148-192)||(34652034-34652078)
chr2 (148-192)||(43065448-43065492)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 210 - 350
Target Start/End: Complemental strand, 9833051 - 9832913
Alignment:
Q  210 ctcaaataagacatccaaataggcctataaacacataaagcgcaaactattaaccgttctccacaacttagattcttacttgtatactgcaatgactttt 309  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833051 ctcaaataagacatccaaataggcctataaaca--taaagcgcaaactattaaccgttctccacaacttagattcttacttgtatactgcaatgactttt 9832954  T
Q  310 gggaggagagtaagaagatcaaaggatggatcaacaccgtt 350  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9832953 gggaggagagtaagaagatcaaaggatggatcaacaccgtt 9832913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 9833373 - 9833265
Alignment:
Q  12 tcatcaaattgaatccatgaagccccggctgccttaagatcagccacaacttccctgagttaataaaaataagcgatttaggaaagtaacatggataaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833373 tcatcaaattgaatccatgaagccccggctgccttaagatcagccacaacttccctgagttaataaaaataagcgatttaggaaagtaacatggataaac 9833274  T
Q  112 aacttaatt 120  Q
    |||||||||    
T  9833273 aacttaatt 9833265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 9833180 - 9833082
Alignment:
Q  120 ttttcttataagcaataagaaatcatgaagagcttatggaaataagttgaaaataatttatggacatgccatat-tttttccataagatctctcaaata 217  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9833180 ttttcttataagcaataagctatcatgaagagcttatggaaataagttgaaaataatttatggacatgccatatgtttttccataagatctctcaaata 9833082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 2455838 - 2455882
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  2455838 agagcttatggaaataagttgaaaatagtttatgggcatgtcata 2455882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 2460193 - 2460124
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 215  Q
    ||||||||||||||||||||||||| || |||  |||||| ||||  || |||||||||| |||||||||    
T  2460193 agagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaa 2460124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 27909680 - 27909635
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccatat 193  Q
    |||||||||||||||||| |||||| || ||||||||||| |||||    
T  27909680 agagcttatggaaataagctgaaaacaacttatggacatgtcatat 27909635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 31583709 - 31583746
Alignment:
Q  150 agcttatggaaataagttgaaaataatttatggacatg 187  Q
    ||||||||||||||||||||||| || |||||||||||    
T  31583709 agcttatggaaataagttgaaaacaacttatggacatg 31583746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 8420239 - 8420195
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||||||||||||||||||||||||  || |||||||| ||||    
T  8420239 agagcttatggaaataagttgaaaatagcttgtggacatgtcata 8420195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 9027604 - 9027675
Alignment:
Q  146 gaagagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 215  Q
    |||||||||||| ||||||| |||||| || ||||||||||| ||||  || |||||||||| ||| |||||    
T  9027604 gaagagcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaa 9027675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 9668027 - 9667983
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  9668027 agagcttatggaaataagttgaaaacagcttatggacatgtcata 9667983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 34939772 - 34939816
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||| ||||||||||||| |||||| |||||||||||||| ||||    
T  34939772 agagtttatggaaataagctgaaaacaatttatggacatgtcata 34939816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 6987783 - 6987739
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  6987783 agagcttatggaaataagttgaaaatagtttatggacatgtcata 6987739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 27725239 - 27725311
Alignment:
Q  145 tgaagagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 215  Q
    ||||| |||||||||||| | ||||||||| |||||||||||| ||||  || |||||||||| |||||||||    
T  27725239 tgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaa 27725311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 11264329 - 11264373
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||    
T  11264329 agagcttatggaaataagttgaaaacagtttatggacatgtcata 11264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 24929521 - 24929565
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||    
T  24929521 agagcttatggaaataagctgaaaacaatttatgaacatgccata 24929565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 28406926 - 28406973
Alignment:
Q  134 ataagaaatcatgaagagcttatggaaataagttgaaaataatttatg 181  Q
    ||||||||||| |||||||||||||||||||| || ||||| ||||||    
T  28406926 ataagaaatcaggaagagcttatggaaataagctgcaaatagtttatg 28406973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 27123394 - 27123325
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 215  Q
    ||||||||||||||||||||||||| || |||  |||||| ||||  || |||||||||| |||||||||    
T  27123394 agagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaa 27123325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 43412385 - 43412434
Alignment:
Q  144 atgaagagcttatggaaataagttgaaaataatttatggacatgccatat 193  Q
    |||||||||||||| ||||||| || ||| |||||||||||||| |||||    
T  43412385 atgaagagcttatgcaaataagatggaaacaatttatggacatgtcatat 43412434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 35017604 - 35017648
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  35017604 agagcttatggaaataagttgaaaataacttatggacatgtcata 35017648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 43333709 - 43333748
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatg 187  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  43333709 agagcttatggaaataagatgaaaataatttatggacatg 43333748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 30259535 - 30259489
Alignment:
Q  141 atcatgaagagcttatggaaataagttgaaaataatttatggacatg 187  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  30259535 atcatggagagcttatggaaataagttgaaaacaatttattgacatg 30259489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 35669005 - 35669038
Alignment:
Q  153 ttatggaaataagttgaaaataatttatggacat 186  Q
    |||||||||||||||||||| |||||||||||||    
T  35669005 ttatggaaataagttgaaaacaatttatggacat 35669038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 39348007 - 39347966
Alignment:
Q  150 agcttatggaaataagttgaaaataatttatggacatgccat 191  Q
    |||||||||||||||| |||||| || |||||||||||||||    
T  39348007 agcttatggaaataagctgaaaacaacttatggacatgccat 39347966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 17420238 - 17420270
Alignment:
Q  155 atggaaataagttgaaaataatttatggacatg 187  Q
    |||||||||||||||||| ||||||||||||||    
T  17420238 atggaaataagttgaaaacaatttatggacatg 17420270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 27626172 - 27626121
Alignment:
Q  141 atcatgaagagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||| ||||    
T  27626172 atcatgaagagcttatggaaataagtttaaaacagtttatggacatgtcata 27626121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 42582528 - 42582562
Alignment:
Q  152 cttatggaaataagttgaaaataatttatggacat 186  Q
    |||||||||||||||||||||||||||||||||||    
T  42582528 cttatggaaataagttgaaaataatttatggacat 42582562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 18875374 - 18875433
Alignment:
Q  133 aataagaaatcatgaagagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||| ||| || |||||||||||||| |||||||||| || |||||| |||||||||    
T  18875374 aataagatatcctggagagcttatggaaacaagttgaaaacaacttatgggcatgccata 18875433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 19138759 - 19138715
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||||||||||||||| |||||| |||||||| ||||| ||||    
T  19138759 agagcttatggaaataagctgaaaacaatttatgtacatgtcata 19138715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 35963265 - 35963313
Alignment:
Q  144 atgaagagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||| |||||||||||||||| |||||| || ||||||||||| ||||    
T  35963265 atgaaaagcttatggaaataagctgaaaacaacttatggacatgtcata 35963313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 41052896 - 41052940
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||    
T  41052896 agagcttatggaaataagttaaaaatagtttatgaacatgtcata 41052940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 6875309 - 6875266
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccat 191  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||    
T  6875309 agagcttaaggaaataagttgaaaaaaatttatgggcatgccat 6875266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 7039833 - 7039862
Alignment:
Q  143 catgaagagcttatggaaataagttgaaaa 172  Q
    ||||||||||||||||||||||||||||||    
T  7039833 catgaagagcttatggaaataagttgaaaa 7039862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 43397855 - 43397894
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatg 187  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  43397855 agagcttatggaagtaagttgaaaacaatttatggacatg 43397894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 37273166 - 37273231
Alignment:
Q  152 cttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaa 215  Q
    ||||||||||||||||||||| || ||||||||||| ||||  || |||||||||| |||| ||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaa 37273231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 29771868 - 29771905
Alignment:
Q  150 agcttatggaaataagttgaaaataatttatggacatg 187  Q
    ||||||||||||||||||||||| || |||||||||||    
T  29771868 agcttatggaaataagttgaaaacaacttatggacatg 29771905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 49465979 - 49465934
Alignment:
Q  147 aagagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||| |||||||||||||||||||||| || ||||||||| ||||    
T  49465979 aagagtttatggaaataagttgaaaatagttcatggacatgtcata 49465934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 43115084 - 43115128
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||||||||||||||| |||||| || ||||||||||| ||||    
T  43115084 agagcttatggaaataagctgaaaacaagttatggacatgtcata 43115128  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 1742081 - 1742003
Alignment:
Q  141 atcatgaagagcttatggaaataagttgaaaataatttatggacatgccata--ttttttccataagatctctcaaata 217  Q
    ||||||||||| |||||||||||||||||| |||  ||||| ||||| ||||  || |||||||||| |||| ||||||    
T  1742081 atcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctctcccaaata 1742003  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 1939374 - 1939330
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  1939374 agagcttatggaaataagttgaaaacagcttatggacatgtcata 1939330  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 16947054 - 16947098
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||| || |||||||||||||||||||||||| ||||| ||||    
T  16947054 agagctcatagaaataagttgaaaataatttatgaacatgtcata 16947098  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 17017719 - 17017763
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    |||||| || |||||||||||||||||||||||| ||||| ||||    
T  17017719 agagctcatagaaataagttgaaaataatttatgaacatgtcata 17017763  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 34652078 - 34652034
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||||||||||||||||||| |  ||||||||||| ||||    
T  34652078 agagcttatggaaataagttgaaaacagcttatggacatgtcata 34652034  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 43065492 - 43065448
Alignment:
Q  148 agagcttatggaaataagttgaaaataatttatggacatgccata 192  Q
    ||||||||| |||||||| |||||| |||||||||||||| ||||    
T  43065492 agagcttattgaaataagctgaaaacaatttatggacatgtcata 43065448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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