View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5697_low_12 (Length: 201)

Name: NF5697_low_12

Description: NF5697

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5697_low_12

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 150; E-Value: 2e-79

Query Start/End: Original strand, 15 - 184

Target Start/End: Complemental strand, 2879216 - 2879047

Alignment:

Q	15	taatactcaatgtagtccaattaccagtcacggaggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagg	114	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2879216	taatattcaatgtcgtccaattaccagtcacggaggagaaaatgttcacatgacgaagaccctgaaaacgcacaatcttgaaaaaccaagattctgcagg	2879117	T

Q	115	gtcatatgcgagagcagcatatgaataccctccagaggtttgtcctatgggcttcataacagtcacacat	184	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2879116	gtcatatgccagagcagcatatgaatacccaccagaggtttgtcctatgggcttcataacagtcacacat	2879047	T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 47 - 140

Target Start/End: Original strand, 2090153 - 2090246

Alignment:

Q	47	gaggagaaaatgttcacatgacgaagaccctgaaaacgcgcaatcttgaaaaaccaagattctgcagggtcatatgcgagagcagcatatgaat	140	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\| \| \| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2090153	gaggagaaaatattaatatggccatgatcctgaaaatgtacaatcttgaagaaccaagattctgaagggtcatataccagagcagcatatgaat	2090246	T

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