View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5697_low_3 (Length: 455)
Name: NF5697_low_3
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5697_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 129 - 438
Target Start/End: Complemental strand, 42204210 - 42203901
Alignment:
| Q |
129 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204210 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
42204111 |
T |
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| Q |
229 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204110 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcata |
42204011 |
T |
|
| Q |
329 |
aatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204010 |
aatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgc |
42203911 |
T |
|
| Q |
429 |
cacttggagt |
438 |
Q |
| |
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| |||||||| |
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| T |
42203910 |
ctcttggagt |
42203901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 129 - 438
Target Start/End: Complemental strand, 42213078 - 42212769
Alignment:
| Q |
129 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213078 |
gacagagcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaattgaagc |
42212979 |
T |
|
| Q |
229 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcata |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212978 |
aatgcattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcata |
42212879 |
T |
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| Q |
329 |
aatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212878 |
aatcgtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgc |
42212779 |
T |
|
| Q |
429 |
cacttggagt |
438 |
Q |
| |
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| |||||||| |
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| T |
42212778 |
ctcttggagt |
42212769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 134 - 438
Target Start/End: Complemental strand, 42219021 - 42218719
Alignment:
| Q |
134 |
agcatatctgcctaagaaagagtggtcttctcaacaaaaacagccatggaaatttaaaaagatacattcaaaacattttcttctcaaa-ttgaagcaatg |
232 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
42219021 |
agcatatcttccgaagaaagagtggtcttctcaacaaaaacagccatggaaatgtaaaaagatacattcaaaacat---cttctcaaagttgaagcaatg |
42218925 |
T |
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| Q |
233 |
cattgtccgattgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatc |
332 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42218924 |
cattgaccgattgatgtcctaccttcatgatggcttgcaagg-ttatcattatagctaatgctttgtcaaccatcccacgtcccgcatcgttcataaatt |
42218826 |
T |
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| Q |
333 |
gtatcaatggagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcacctt-ttttgccac |
431 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |
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| T |
42218825 |
gtatcaatggagcaactatcccggctttcacagctctagctttgtttccatgataaatacatagattaaatatagcggtagcagcacctttttttgcctc |
42218726 |
T |
|
| Q |
432 |
ttggagt |
438 |
Q |
| |
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||||||| |
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| T |
42218725 |
ttggagt |
42218719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 242 - 438
Target Start/End: Original strand, 42420163 - 42420359
Alignment:
| Q |
242 |
attgatgtcctgccttcatgatggcttgcaaggattatcattatagctaatgctttgtcaaccatcccacgtcccacatcgttcataaatcgtatcaatg |
341 |
Q |
| |
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|||| |||||| ||||||||||| | ||||||||| ||| |||||||| ||||| |||||||||||||| ||| |||| ||||||||||||||||| | |
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| T |
42420163 |
attgctgtccttccttcatgatgacctgcaaggatcgtcagtatagctagtgcttcgtcaaccatcccaccgcccgcatccttcataaatcgtatcaacg |
42420262 |
T |
|
| Q |
342 |
gagcaactatcccggcttttacagctctagctttgtctccatgataaatacatagattaaatatagcagtagcagcaccttttttgccacttggagt |
438 |
Q |
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||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||| |
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| T |
42420263 |
gagcaactatcccggctttaacagctctagctttgtttccttgataaatacatagattaaatatagcagtagctgcatcttttttgcctcttggagt |
42420359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 42204328 - 42204237
Alignment:
| Q |
11 |
atcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42204328 |
atcatcaatgttagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
42204237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 42213196 - 42213105
Alignment:
| Q |
11 |
atcatcaatattagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
102 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213196 |
atcatcaatgttagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
42213105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 42219130 - 42219050
Alignment:
| Q |
22 |
tagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagtttgattatcgttattgtttgaag |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
42219130 |
tagacttaaaaactggacgaatataagcatgaagaaagtaacctttttaagttcaagttcgattattgttattgtttgaag |
42219050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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