View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5697_low_5 (Length: 404)

Name: NF5697_low_5
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5697_low_5
NF5697_low_5
[»] chr2 (5 HSPs)
chr2 (19-161)||(45663897-45664039)
chr2 (160-206)||(29711977-29712023)
chr2 (158-206)||(18737900-18737949)
chr2 (166-199)||(22526028-22526061)
chr2 (166-206)||(36587495-36587535)
[»] chr4 (5 HSPs)
chr4 (332-404)||(22450484-22450556)
chr4 (157-206)||(51255741-51255791)
chr4 (299-332)||(35580260-35580293)
chr4 (158-207)||(37297045-37297094)
chr4 (159-199)||(4915707-4915747)
[»] chr3 (10 HSPs)
chr3 (160-207)||(31664622-31664669)
chr3 (160-207)||(31931044-31931092)
chr3 (162-208)||(31425534-31425581)
chr3 (162-206)||(37143121-37143166)
chr3 (160-199)||(31350640-31350679)
chr3 (157-206)||(49875791-49875841)
chr3 (162-195)||(15927633-15927666)
chr3 (160-208)||(33976418-33976467)
chr3 (166-206)||(48353000-48353041)
chr3 (299-331)||(24551116-24551148)
[»] chr1 (6 HSPs)
chr1 (158-206)||(18982515-18982564)
chr1 (161-203)||(36775071-36775114)
chr1 (160-206)||(46859416-46859463)
chr1 (150-206)||(10890072-10890129)
chr1 (168-206)||(36775112-36775151)
chr1 (166-207)||(52714926-52714968)
[»] chr8 (8 HSPs)
chr8 (163-199)||(21514971-21515007)
chr8 (166-199)||(31266268-31266301)
chr8 (161-199)||(40649449-40649487)
chr8 (154-206)||(4658289-4658342)
chr8 (158-206)||(33100495-33100544)
chr8 (158-199)||(41639822-41639863)
chr8 (299-331)||(37032991-37033023)
chr8 (299-331)||(42996600-42996632)
[»] chr6 (6 HSPs)
chr6 (159-206)||(354273-354321)
chr6 (164-206)||(28982665-28982708)
chr6 (299-333)||(1196185-1196219)
chr6 (165-206)||(5456876-5456918)
chr6 (156-206)||(22079590-22079640)
chr6 (166-199)||(34383892-34383925)
[»] chr7 (6 HSPs)
chr7 (162-206)||(48814834-48814879)
chr7 (165-195)||(2819256-2819286)
chr7 (157-199)||(35823009-35823051)
chr7 (166-199)||(43159609-43159642)
chr7 (159-206)||(12007212-12007260)
chr7 (159-199)||(37352107-37352147)
[»] chr5 (2 HSPs)
chr5 (166-206)||(16594402-16594443)
chr5 (166-206)||(1981894-1981934)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 45664039 - 45663897
Alignment:
Q  19 aagttcggctgctttcactgcttcttcaaacttgtgtatctatccacttgggaatatcacctttatgcctctccaatacttttgtttcctcctactgata 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45664039 aagttcggctgctttcactgcttcttcaaacttgtgtatctctccacttgggaatatcacctttatgcctctccaatacttttgtttcctcctactgata 45663940  T
Q  119 gactacatgaaatgtagttccccatatgttatgtataatataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45663939 gactacatgaaatgtagttccccatatgttatgtataatataa 45663897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 29711977 - 29712023
Alignment:
Q  160 aagagtaatgatatttgaacatccattttttaacaattttgtgacaa 206  Q
    ||||| ||||||||||||||||||||||| | |||||||||||||||    
T  29711977 aagagaaatgatatttgaacatccattttgtgacaattttgtgacaa 29712023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 18737949 - 18737900
Alignment:
Q  158 ataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    ||||||| ||||||||||| | |||||||||||||||| |||||||||||    
T  18737949 ataagagaaatgatatttgtatatccattttttaacaacttttgtgacaa 18737900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 22526061 - 22526028
Alignment:
Q  166 aatgatatttgaacatccattttttaacaatttt 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  22526061 aatgatatttgaacatccattttttgacaatttt 22526028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 36587535 - 36587495
Alignment:
Q  166 aatgatatttgaacatccattttttaacaattttgtgacaa 206  Q
    ||||||||||||||| ||||||||| |||||||| ||||||    
T  36587535 aatgatatttgaacaaccattttttgacaattttttgacaa 36587495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 22450484 - 22450556
Alignment:
Q  332 aatcctcaatgttcattaatttacctctctcttaaacaaaacaaaaaattgattgttctctgctctcaaccga 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22450484 aatcctcaatgttcattaatttacctctctcttaaacaaaacaaaaaattgattgttctctgctctcaaccga 22450556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 51255741 - 51255791
Alignment:
Q  157 tataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||| ||||||||||||||| ||||||||| |||| |||||||||||    
T  51255741 tataagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 51255791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Original strand, 35580260 - 35580293
Alignment:
Q  299 ttgtctcatttgattgttcaaataacaccactca 332  Q
    |||||||||||||||||||||||||||| |||||    
T  35580260 ttgtctcatttgattgttcaaataacactactca 35580293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 37297045 - 37297094
Alignment:
Q  158 ataagagtaatgatatttgaacatccattttttaacaattttgtgacaat 207  Q
    ||||||| ||||||||||||||| ||||||||||  | ||||||||||||    
T  37297045 ataagagaaatgatatttgaacaaccattttttacaacttttgtgacaat 37297094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 4915747 - 4915707
Alignment:
Q  159 taagagtaatgatatttgaacatccattttttaacaatttt 199  Q
    |||||| ||||||||||||||||||||||| | ||||||||    
T  4915747 taagagaaatgatatttgaacatccattttgtgacaatttt 4915707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 31664622 - 31664669
Alignment:
Q  160 aagagtaatgatatttgaacatccattttttaacaattttgtgacaat 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  31664622 aagagtaatgatatttgaacatccattttttaacaactttgtgacaat 31664669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 31931092 - 31931044
Alignment:
Q  160 aagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaat 207  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31931092 aagagtaatgatatttgaacatccattttttaacaacttttgtgacaat 31931044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 31425534 - 31425581
Alignment:
Q  162 gagtaatgatatttgaacatccattttttaacaa-ttttgtgacaatc 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  31425534 gagtaatgatatttgaacatccattttttaacaacttttgtgacaatc 31425581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 37143121 - 37143166
Alignment:
Q  162 gagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  37143121 gagtaatgatatttgaacatccattttttaacaacttttgtgacaa 37143166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 31350679 - 31350640
Alignment:
Q  160 aagagtaatgatatttgaacatccattttttaacaatttt 199  Q
    ||||| |||||||||| |||||||||||||||||||||||    
T  31350679 aagagaaatgatattttaacatccattttttaacaatttt 31350640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 49875791 - 49875841
Alignment:
Q  157 tataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||| ||| |||||||||| ||||||||||||||||||| |||||||||||    
T  49875791 tatatgagaaatgatattttaacatccattttttaacaacttttgtgacaa 49875841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 15927666 - 15927633
Alignment:
Q  162 gagtaatgatatttgaacatccattttttaacaa 195  Q
    ||||||| ||||||||||||||||||||||||||    
T  15927666 gagtaataatatttgaacatccattttttaacaa 15927633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 33976467 - 33976418
Alignment:
Q  160 aagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaatc 208  Q
    ||||| ||||||||||||||||||||||| |||||| |||| ||||||||    
T  33976467 aagagaaatgatatttgaacatccattttgtaacaacttttatgacaatc 33976418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 48353000 - 48353041
Alignment:
Q  166 aatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  48353000 aatgatatttgtacatccattttttaacaacttttgtgacaa 48353041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 24551148 - 24551116
Alignment:
Q  299 ttgtctcatttgattgttcaaataacaccactc 331  Q
    |||||||||||||||||||||||||||| ||||    
T  24551148 ttgtctcatttgattgttcaaataacactactc 24551116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 18982515 - 18982564
Alignment:
Q  158 ataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18982515 ataagagtaatgatatttgaacatccattttttaacaacttttgtgacaa 18982564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 36775071 - 36775114
Alignment:
Q  161 agagtaatgatatttgaacatccattttttaacaa-ttttgtga 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  36775071 agagtaatgatatttgaacatccattttttaacaacttttgtga 36775114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 46859416 - 46859463
Alignment:
Q  160 aagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  46859416 aagagtaatgatatttgagcatccattttttaacaacttttgtgacaa 46859463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 10890129 - 10890072
Alignment:
Q  150 tgtataatataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||| |||||||||| ||||||||||||||||||||||| | |||| |||||||||||    
T  10890129 tgtaaaatataagagaaatgatatttgaacatccattttatgacaacttttgtgacaa 10890072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 36775112 - 36775151
Alignment:
Q  168 tgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36775112 tgatatttgaacatccattttttaacaacttttgtgacaa 36775151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 52714968 - 52714926
Alignment:
Q  166 aatgatatttgaacatccattttttaacaa-ttttgtgacaat 207  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  52714968 aatgatatttgaacatccattttataacaacttttgtgacaat 52714926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 21515007 - 21514971
Alignment:
Q  163 agtaatgatatttgaacatccattttttaacaatttt 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  21515007 agtaatgatatttgaacatccattttttaacaatttt 21514971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 31266301 - 31266268
Alignment:
Q  166 aatgatatttgaacatccattttttaacaatttt 199  Q
    ||||||||||||||||||||||||||||||||||    
T  31266301 aatgatatttgaacatccattttttaacaatttt 31266268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 40649449 - 40649487
Alignment:
Q  161 agagtaatgatatttgaacatccattttttaacaatttt 199  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  40649449 agagaaatgatatttgaacattcattttttaacaatttt 40649487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 4658342 - 4658289
Alignment:
Q  154 taatataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||| |||||| ||||||||||||||||||||||| | |||| |||||||||||    
T  4658342 taatttaagagaaatgatatttgaacatccattttatgacaacttttgtgacaa 4658289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 33100544 - 33100495
Alignment:
Q  158 ataagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    ||||||| ||||||||||||||| ||||||| |||||| |||||||||||    
T  33100544 ataagagaaatgatatttgaacaaccattttataacaacttttgtgacaa 33100495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 41639863 - 41639822
Alignment:
Q  158 ataagagtaatgatatttgaacatccattttttaacaatttt 199  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||    
T  41639863 ataagagaaatgatatttgtacatccattttctaacaatttt 41639822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 37033023 - 37032991
Alignment:
Q  299 ttgtctcatttgattgttcaaataacaccactc 331  Q
    |||||||||||||||||||||||||||| ||||    
T  37033023 ttgtctcatttgattgttcaaataacactactc 37032991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 42996600 - 42996632
Alignment:
Q  299 ttgtctcatttgattgttcaaataacaccactc 331  Q
    |||||||||||||||||||||||||||| ||||    
T  42996600 ttgtctcatttgattgttcaaataacactactc 42996632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 354273 - 354321
Alignment:
Q  159 taagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  354273 taagagtaatgatgtttgaacatccattttttaacaacttttgtgacaa 354321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 28982708 - 28982665
Alignment:
Q  164 gtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  28982708 gtaatgatatttgaacatccattttttaacaacttttgtgacaa 28982665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Original strand, 1196185 - 1196219
Alignment:
Q  299 ttgtctcatttgattgttcaaataacaccactcaa 333  Q
    |||||||||||||||||||||||||||| ||||||    
T  1196185 ttgtctcatttgattgttcaaataacactactcaa 1196219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 5456918 - 5456876
Alignment:
Q  165 taatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  5456918 taatgatatttgaacattcattttttaacaacttttgtgacaa 5456876  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 22079640 - 22079590
Alignment:
Q  156 atataagagtaatgatatttgaacatccattttttaacaattttgtgacaa 206  Q
    ||||||||| ||||||||||||||| ||||||||||  | |||||||||||    
T  22079640 atataagagaaatgatatttgaacaaccattttttacaacttttgtgacaa 22079590  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 34383925 - 34383892
Alignment:
Q  166 aatgatatttgaacatccattttttaacaatttt 199  Q
    |||||||||||||||| |||||||||||||||||    
T  34383925 aatgatatttgaacattcattttttaacaatttt 34383892  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 48814879 - 48814834
Alignment:
Q  162 gagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||    
T  48814879 gagtaatgatatttgaacattcattttttaacaacttttgtgacaa 48814834  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 2819256 - 2819286
Alignment:
Q  165 taatgatatttgaacatccattttttaacaa 195  Q
    |||||||||||||||||||||||||||||||    
T  2819256 taatgatatttgaacatccattttttaacaa 2819286  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 35823051 - 35823009
Alignment:
Q  157 tataagagtaatgatatttgaacatccattttttaacaatttt 199  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||    
T  35823051 tataagagaaatgatatttgtacatccattttctaacaatttt 35823009  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 43159642 - 43159609
Alignment:
Q  166 aatgatatttgaacatccattttttaacaatttt 199  Q
    ||||||||||||||| ||||||||||||||||||    
T  43159642 aatgatatttgaacaaccattttttaacaatttt 43159609  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 12007260 - 12007212
Alignment:
Q  159 taagagtaatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||| ||||||||||||||| ||||||||| |||| |||||||||||    
T  12007260 taagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 12007212  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 37352107 - 37352147
Alignment:
Q  159 taagagtaatgatatttgaacatccattttttaacaatttt 199  Q
    |||||| ||||||||||||||| ||||||||| ||||||||    
T  37352107 taagagaaatgatatttgaacaaccattttttgacaatttt 37352147  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 16594443 - 16594402
Alignment:
Q  166 aatgatatttgaacatccattttttaacaa-ttttgtgacaa 206  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  16594443 aatgatatttgaacatccattttttaacaacttttgtgacaa 16594402  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 1981894 - 1981934
Alignment:
Q  166 aatgatatttgaacatccattttttaacaattttgtgacaa 206  Q
    ||||||||||||||| |||||||| |||| |||||||||||    
T  1981894 aatgatatttgaacaaccatttttaaacacttttgtgacaa 1981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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