View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5697_low_6 (Length: 374)

Name: NF5697_low_6
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5697_low_6
NF5697_low_6
[»] chr3 (2 HSPs)
chr3 (34-362)||(10543859-10544187)
chr3 (80-256)||(37192891-37193067)
[»] chr5 (2 HSPs)
chr5 (65-253)||(19717838-19718026)
chr5 (95-256)||(19716508-19716669)
[»] chr8 (3 HSPs)
chr8 (80-256)||(2997317-2997493)
chr8 (130-185)||(25575143-25575198)
chr8 (130-185)||(20077426-20077481)
[»] chr6 (4 HSPs)
chr6 (80-256)||(33460454-33460630)
chr6 (80-177)||(5374237-5374333)
chr6 (80-177)||(34824690-34824787)
chr6 (130-177)||(25420574-25420621)
[»] scaffold0779 (1 HSPs)
scaffold0779 (130-185)||(4719-4774)
[»] chr2 (2 HSPs)
chr2 (130-192)||(18499115-18499177)
chr2 (130-192)||(26360786-26360848)
[»] chr4 (1 HSPs)
chr4 (130-177)||(2005593-2005640)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 34 - 362
Target Start/End: Complemental strand, 10544187 - 10543859
Alignment:
Q  34 ccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattca 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  10544187 ccctataggcttgacattaggaggagtttgcacaattgttcaggtactattcttagccaaaacatctaattcagaatccatagcctttacctaacattca 10544088  T
Q  134 gactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatg 233  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10544087 gactgacatgctttcttataggttttgggctcagtactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgaaagtgaatgaaatg 10543988  T
Q  234 atgcaatagggtaaggagtaccttgtgtgattgttgctgatgaatgagcagaagaagtattacatacaaagtctgacaaataggttggggcatgttttgt 333  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10543987 atgcaatagggtaaggagtaccttatgtgattgttgttgatgaatgagcagaagaagtattacatacaaagtctgacaaataggttggggcatgttttgt 10543888  T
Q  334 tctaacaggtttataaagttgaggtgatg 362  Q
    |||||||||||||||||||||||||||||    
T  10543887 tctaacaggtttataaagttgaggtgatg 10543859  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 37193067 - 37192891
Alignment:
Q  80 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgtaa 179  Q
    ||||||||||| || || |||||||||||||||||||| |||| | || ||||||||||||  ||||| || |||||||| |||||| ||| |||||| |    
T  37193067 ccattcttagctaatgcttctaattcagaatccatagcttttaaccaacattcagactgactagcttctttgtaggtttttggctcagtacattgtgtga 37192968  T
Q  180 tagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgcaatagggtaaggagtacct 256  Q
     ||| | |||||| | ||| || ||   |||||  |||| |   |||||| ||||||||||||||||| ||||||||    
T  37192967 cagacatagaaaaagacttttgggatgatgatagatgtgcataagaatgatatgatgcaatagggtaaagagtacct 37192891  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 253
Target Start/End: Original strand, 19717838 - 19718026
Alignment:
Q  65 acaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggct 164  Q
    |||||||| || || ||||||| | | || |||||||||||| ||| ||||||||||| | |||  ||||||||||| || ||||| |||||||| ||||    
T  19717838 acaattgtccaagttccattctaatcgaatgcatctaattcaaaattcatagcctttaaccaatgctcagactgacaagcctccttgtaggtttttggct 19717937  T
Q  165 caatactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgcaatagggtaaggagta 253  Q
    || |||  | | ||| ||| | |||||| | ||| || ||| |||||||||||| || ||||||| ||||||||||||||||| |||||    
T  19717938 cagtacaatttttaacagacatagaaaaagacttatgggaaggtgataagtgtgcaaatgaatgatatgatgcaatagggtaacgagta 19718026  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 256
Target Start/End: Original strand, 19716508 - 19716669
Alignment:
Q  95 gcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatg 194  Q
    |||||||||||| ||| ||||||||||| | |||  ||||||| ||| || ||||| ||||||||  ||||| ||   | |||||  || | |||||| |    
T  19716508 gcatctaattcaaaattcatagcctttaaccaatgctcagactaacaagcctccttgtaggttttttgctcagtataatttgtaacggacatagaaaaag 19716607  T
Q  195 ccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgcaatagggtaaggagtacct 256  Q
     ||| || ||| |||||||||||| || | ||||| ||||||||||||||||| ||||||||    
T  19716608 acttatgagaaggtgataagtgtgcaaattaatgatatgatgcaatagggtaacgagtacct 19716669  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 2997493 - 2997317
Alignment:
Q  80 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgtaa 179  Q
    |||||||||||||| || ||||||||||| |||||||| |||| | || ||||||||||||  ||||| || |||||||| |||||| ||| |||||| |    
T  2997493 ccattcttagccaatgcttctaattcagattccatagcttttaaccaacattcagactgactagcttctttgtaggtttttggctcagtacattgtgtga 2997394  T
Q  180 tagaaagagaaaatgccttgtgtgaatg-tgataagtgtgtaagtgaatgaaatgatgcaatagggtaaggagtacct 256  Q
     ||| | |||||| | ||| || ||||| |||||| |||| |   |||||| ||||||||||||||||| ||||||||    
T  2997393 cagacatagaaaaagacttttg-gaatgatgataaatgtgcataagaatgatatgatgcaatagggtaaagagtacct 2997317  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 25575143 - 25575198
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 185  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||    
T  25575143 ttcagactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaa 25575198  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 20077481 - 20077426
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 185  Q
    |||||||||||||||||| || |||||||| |||||| |||||||||| |||||||    
T  20077481 ttcagactgacatgcttctttgtaggttttaggctcagtactttgtgtgatagaaa 20077426  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 256
Target Start/End: Complemental strand, 33460630 - 33460454
Alignment:
Q  80 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgtaa 179  Q
    ||||||||| | || || ||||||||||| |||||||| |||| | || ||||||||||||  ||||| ||||||||||| |||||| ||| |||||| |    
T  33460630 ccattcttacctaatgcttctaattcagattccatagcttttaaccaacattcagactgactagcttctttataggtttttggctcagtacattgtgtga 33460531  T
Q  180 tagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgcaatagggtaaggagtacct 256  Q
     ||| | |||||| | ||| || ||   |||||| |||| |   |||||| ||||||||||||||||| ||||||||    
T  33460530 cagacatagaaaaagacttttgggatgatgataaatgtgcataagaatgatatgatgcaatagggtaaagagtacct 33460454  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 5374237 - 5374333
Alignment:
Q  80 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgt 177  Q
    ||||||||||| ||||| ||||||||| ||| ||| ||  ||| | |||  |||||||||||||||| |||||||||||| |||||| ||||||||||    
T  5374237 ccattcttagctaaagcctctaattca-aattcattgcagttaaccaatgctcagactgacatgcttacttataggtttttggctcagtactttgtgt 5374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 34824787 - 34824690
Alignment:
Q  80 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgt 177  Q
    ||||||||||| || || ||||||||||| |||||||| |||| | || ||||||||||||  ||||| || |||||||| |||||| ||| ||||||    
T  34824787 ccattcttagctaatgcttctaattcagattccatagcttttaaccaacattcagactgactagcttctttgtaggtttttggctcagtacattgtgt 34824690  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 25420574 - 25420621
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgt 177  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  25420574 ttcagactgacatgcttctttataggttttgggttcagtactttgtgt 25420621  T

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Target: scaffold0779 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 4774 - 4719
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 185  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||    
T  4774 ttcagactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaa 4719  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 18499115 - 18499177
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaa 192  Q
    |||| |||||||||| || |||||||||||||||||| ||||||||||||| |||| ||||||    
T  18499115 ttcaaactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaatagaaaa 18499177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 26360786 - 26360848
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaa 192  Q
    ||||||||||||||| || |||||||||||||||||| ||||| ||||||| |||| ||||||    
T  26360786 ttcagactgacatgcctctttataggttttgggctcagtacttcgtgtaatggaaatagaaaa 26360848  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 2005640 - 2005593
Alignment:
Q  130 ttcagactgacatgcttccttataggttttgggctcaatactttgtgt 177  Q
    |||||||||||||||||| || ||||||||||| ||| ||||||||||    
T  2005640 ttcagactgacatgcttctttttaggttttgggttcagtactttgtgt 2005593  T

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