View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5697_low_9 (Length: 240)
Name: NF5697_low_9
Description: NF5697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5697_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4631795 - 4631573
Alignment:
| Q |
1 |
acaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttc |
100 |
Q |
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| T |
4631795 |
acaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttc |
4631696 |
T |
|
| Q |
101 |
acattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccc |
200 |
Q |
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| T |
4631695 |
acattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttatccaacatcgtattcgtatcaacacattgaaacctccaacgccc |
4631596 |
T |
|
| Q |
201 |
tcttcacagtcaaagtaggaacc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
4631595 |
tcttcacagtcaaagtaggaacc |
4631573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 4667775 - 4667581
Alignment:
| Q |
23 |
aaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatca |
122 |
Q |
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||||||||||||||||||||||||||| ||||||| | ||||| || ||||||||||||| || ||||| ||||||||||||| |||||| | |||| |
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| T |
4667775 |
aaagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcacgtatatcattttccgatttcacattctcattttctccgatca |
4667676 |
T |
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| Q |
123 |
ccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaac |
222 |
Q |
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| T |
4667675 |
atagtggccctgtttttcttcgcctccatttttacccaacatc------gtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaac |
4667582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 18925001 - 18925197
Alignment:
| Q |
21 |
tcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccat |
120 |
Q |
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||||| ||||| | || |||||||||||| ||||||| | |||||| || ||||| ||||||||||| ||||| || ||||||||||| ||| ||||| | |
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| T |
18925001 |
tcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttccaacttcacattctcatttccttccgt |
18925100 |
T |
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| Q |
121 |
caccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtagga |
220 |
Q |
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| | ||| ||||||||||||||||||| |||||||||||||| ||||||||| || ||||||||| | ||||||||||||| |||||||| ||| |
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| T |
18925101 |
cgctaatagccctatttttcttcgccttcatttttacccaaca------tcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttgga |
18925194 |
T |
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