View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5698-Insertion-1 (Length: 675)
Name: NF5698-Insertion-1
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5698-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 103 - 595
Target Start/End: Original strand, 9451879 - 9452368
Alignment:
| Q |
103 |
tgttcttctcaatgcatgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaattttt |
202 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451879 |
tgttcttctcaattcatgttattctcctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaattttt |
9451978 |
T |
|
| Q |
203 |
-cttccgttgccatgccttttccacatagctatataaattgttctgtcggaagagatgttttgccgttaccatgccttttaccgtaatttttctgtcgtt |
301 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| ||| |
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| T |
9451979 |
tctgatgttgccatgccttttccagatagctatataaattgttctgtcataagagatgttttgccattgccatgccttttaccgtaatttttctgtagtt |
9452078 |
T |
|
| Q |
302 |
gccatgccttttccagatatcattgccttaaagggtagtacatgattgaaatgtgaaaagtaaataaaaaaggaatttgatagagcaatgttctgaacat |
401 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
9452079 |
gccatgccttttccagatatcattgccttaaaggttagtacatgattgaaatgtgaaaaggaaataaaaaaagattttgatagagcaatgttctgaaca- |
9452177 |
T |
|
| Q |
402 |
ttttttctcgaattactaattattattacattagcatcttatagtgnnnnnnnnnnncttttcataaaggcaaacaaggatgatgaatatcccgccgatt |
501 |
Q |
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|||||||| |||||||||||||||||||| | ||||| | |||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
9452178 |
ttttttcttgaattactaattattattac---tgtgtcttagtatctttttttttttgttttcataaatgcagacaaggatgatgaatatcccgccgatt |
9452274 |
T |
|
| Q |
502 |
ttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggaatagagttgcatgtgctgttgttgacaaggagcatcta |
595 |
Q |
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| T |
9452275 |
ttaaggtttgttgcgcatcattcaaagatggtgaacgtcaaaattgaacctaaggaatagagttgaacatgttgttgttgacgaagagcatcta |
9452368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 240; Significance: 1e-132; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 266 - 595
Target Start/End: Complemental strand, 21547436 - 21547109
Alignment:
| Q |
266 |
cgttaccatgccttttaccgtaatttttctgtcgttgccatgccttttccagatatcattgccttaaagggtagtacatgattgaaatgtgaaaagtaaa |
365 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
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| T |
21547436 |
cgttgccatgccttttaccgtaatttttctgtcgttgccatgccttttccagatatcattcccttaaagggttgtacatgattgaaatgtg-aaagtaaa |
21547338 |
T |
|
| Q |
366 |
taaaaaaggaatttgatagagcaatgttctgaacatttttttctcgaattactaattattattacattagcatcttatagtgnnnnnnnnnnncttttca |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |
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| T |
21547337 |
taaaaaaggaatttgatagagcaatgttctgaacatttttttcttgaattactaattattattactgtagtgtcttatagtg-ttttttttttcttttca |
21547239 |
T |
|
| Q |
466 |
taaaggcaaacaaggatgatgaatatcccgccgattttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggaatagagtt |
565 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21547238 |
taaaggcaaacaaggatgatgaatatcctgccgattttaaggtctgttacacaaccttcaaagatggtgcacgtcaaaattgaacctaaggattagagtt |
21547139 |
T |
|
| Q |
566 |
gcatgtgctgttgttgacaaggagcatcta |
595 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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| T |
21547138 |
gcatgtgctgttgttgacgaggagcatcta |
21547109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 21548078 - 21547833
Alignment:
| Q |
18 |
aaaaattagggttcttggcctcccttcacaagcatcaagatggagctaaagattaactcttgacagcaaggtatatcaggcagtatgttcttctcaatgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21548078 |
aaaaattagggttcttggcctcccttcacaagcatcaagatggagttaaagattaactcttgacagcaaggtatatcaggcagtatgttcttctcaatgc |
21547979 |
T |
|
| Q |
118 |
atgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaatttttcttccgttgcca--- |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547978 |
atgttattcttctaaggtaatagtgaagcattactttcttatcattgccttactggtatctatttcttcttttaccgtaatttttcttccgttgccatgc |
21547879 |
T |
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| Q |
215 |
--tgccttttccacatagctatataaattgttctgtcggaagagat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547878 |
catgccttttccacatagctatataaattgttctgtcggaagagat |
21547833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 253 - 313
Target Start/End: Complemental strand, 21547481 - 21547421
Alignment:
| Q |
253 |
agagatgttttgccgttaccatgccttttaccgtaatttttctgtcgttgccatgcctttt |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21547481 |
agagatgttttgccgttaccatgccttttaccgtaatttttctgtcgttgccatgcctttt |
21547421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 21547425 - 21547386
Alignment:
| Q |
186 |
cttttaccgtaatttttcttccgttgccatgccttttcca |
225 |
Q |
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| T |
21547425 |
cttttaccgtaatttttctgtcgttgccatgccttttcca |
21547386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 645 - 675
Target Start/End: Complemental strand, 21547059 - 21547029
Alignment:
| Q |
645 |
acaacaattaccatggttgtttctgttctgt |
675 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
21547059 |
acaacaattaccatggttgtttctgttctgt |
21547029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 21547457 - 21547421
Alignment:
| Q |
186 |
cttttaccgtaatttttcttccgttgccatgcctttt |
222 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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| T |
21547457 |
cttttaccgtaatttttctgtcgttgccatgcctttt |
21547421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 52935362 - 52935437
Alignment:
| Q |
19 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagctaaagattaactcttgacagcaaggtatatc |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52935362 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagttaaagattaactcttgacagcaaggtatatc |
52935437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 52942997 - 52943072
Alignment:
| Q |
19 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagctaaagattaactcttgacagcaaggtatatc |
94 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52942997 |
aaaattagggttcttggcctcccttcacaagcatcaagatggagttaaagattaactcttgacagcaaggtatatc |
52943072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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