View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5698-Insertion-2 (Length: 622)

Name: NF5698-Insertion-2
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5698-Insertion-2
NF5698-Insertion-2
[»] chr4 (8 HSPs)
chr4 (8-622)||(39278895-39279502)
chr4 (317-372)||(23016261-23016316)
chr4 (322-371)||(46088556-46088605)
chr4 (317-372)||(29577963-29578018)
chr4 (224-270)||(2253949-2253995)
chr4 (318-372)||(23133087-23133141)
chr4 (317-371)||(41370208-41370262)
chr4 (317-369)||(48097964-48098016)
[»] chr3 (5 HSPs)
chr3 (317-372)||(53040481-53040536)
chr3 (318-372)||(13804887-13804941)
chr3 (322-371)||(52299059-52299108)
chr3 (335-372)||(46547819-46547856)
chr3 (323-367)||(54866289-54866333)
[»] chr1 (5 HSPs)
chr1 (319-372)||(22177287-22177340)
chr1 (322-371)||(40203118-40203167)
chr1 (317-370)||(6983031-6983084)
chr1 (319-372)||(45359286-45359339)
chr1 (243-271)||(43766493-43766521)
[»] chr2 (5 HSPs)
chr2 (317-372)||(9153513-9153568)
chr2 (322-371)||(44330669-44330718)
chr2 (322-371)||(44365443-44365492)
chr2 (317-371)||(6334712-6334766)
chr2 (317-371)||(8964404-8964458)
[»] chr7 (8 HSPs)
chr7 (317-367)||(24299175-24299225)
chr7 (317-367)||(19620004-19620054)
chr7 (325-371)||(26804059-26804105)
chr7 (322-372)||(36061541-36061591)
chr7 (322-371)||(26402822-26402871)
chr7 (323-371)||(8920743-8920791)
chr7 (317-373)||(34398113-34398169)
chr7 (317-369)||(34681704-34681756)
[»] chr8 (10 HSPs)
chr8 (322-371)||(34336513-34336562)
chr8 (322-371)||(44254167-44254216)
chr8 (317-365)||(37564378-37564426)
chr8 (314-369)||(11727942-11727996)
chr8 (317-372)||(41106037-41106092)
chr8 (317-367)||(31844262-31844312)
chr8 (319-372)||(39691153-39691206)
chr8 (322-371)||(43429706-43429755)
chr8 (323-367)||(33636736-33636780)
chr8 (323-371)||(42760187-42760235)
[»] chr6 (2 HSPs)
chr6 (322-371)||(22020561-22020610)
chr6 (322-371)||(22055058-22055107)
[»] chr5 (2 HSPs)
chr5 (322-371)||(13978672-13978721)
chr5 (322-371)||(591264-591313)
[»] scaffold0011 (1 HSPs)
scaffold0011 (317-369)||(219202-219254)


Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 622
Target Start/End: Original strand, 39278895 - 39279502
Alignment:
Q  8 acatctatgttatactattcatgttagacattaaatgtttctcatacatcatctaaatatcattatattctagtctctttcgttagatctaagcttgttg 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  39278895 acatctatgttatactattcatgttagacattcaatgtttctcatacatcgtctaaatatcgttatattctagtctctttcgttagatctaaccttgttg 39278994  T
Q  108 gttgactagacatatactcttttccgttattattatagacaacaaattacatttcagatttattgaacaacaaatatatctgatttattataggttagac 207  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||    
T  39278995 gttgactagacatatactcttttccgttactattatagacaacaaattacatttcaaatttatcgaataacaaatgtatctgatttattataggttagac 39279094  T
Q  208 acattagttattcaacaaatttaaaaaataaagtcttgtttataataatgatcggagggagtactataaattgtgtcttgctaacgagtgactctgatac 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||  |||||||||||    
T  39279095 acattagttattcaacaaatttaaaaaataaagtcttgtttataataatgattggaaggagtactataaattgtgtcttgctaacgacggactctgatac 39279194  T
Q  308 actctttaaaaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaaagatgggttgcctactgcaacaccctaatcatttt 407  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39279195 actctttaaaaattaagaaattattccttaaaaaagtcaaattcttcaatttccaatgcattgaaagatgggttgcctactgcaacaccctaatcatttt 39279294  T
Q  408 taaagagaaagaaaatgagtactcgcggggcggggtgggggctacagccaaaaccctttaggaaaacaaaagcaagnnnnnnngattaagagaacgacca 507  Q
    |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  39279295 taaagagaaagaaaatgagtactcgcggggcgggg-----gctacagccaaaaccctttaggaaaacaaaagcaagaaaaaaagattaagagaacgacca 39279389  T
Q  508 acctaaaagcggaaggtacgacaacacacaaacgactagcgaggcgaatagttagatgcacctaccttaaaccctttgataggctcagtttgctgttgct 607  Q
    ||||||||||||||||||||||||||   |  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39279390 acctaaaagcggaaggtacgacaacaatga--cgactagcgaggcgaacagttggatgcacctaccttaaaccctttgataggctcagtttgctgttgct 39279487  T
Q  608 ttatctagccgttct 622  Q
    |||||||||||||||    
T  39279488 ttatctagccgttct 39279502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 23016316 - 23016261
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||||||||||||| ||||| ||||||||   |||||||||||||||||||||    
T  23016316 aaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaa 23016261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 46088605 - 46088556
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||||| ||||||||| |||||  |||||||||||||||||||||    
T  46088605 aagaaattattccttaaaaaaatcaaaaacttcaatttccaatgcattga 46088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 29577963 - 29578018
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||| ||||||||| ||||||||||||||| ||| ||||| ||||| ||||||    
T  29577963 aaattaaaaaattattaattaaaaaagtcaaatactttaatttacaatgtattgaa 29578018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 2253995 - 2253949
Alignment:
Q  224 aaatttaaaaaataaagtcttgtttataataatgatcggagggagta 270  Q
    |||| |||||||| || | ||||||||||||||||||||||||||||    
T  2253995 aaatctaaaaaattaatttttgtttataataatgatcggagggagta 2253949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 23133141 - 23133087
Alignment:
Q  318 aattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||||||||||| |||||||||||  ||  ||||||||||| ||||||||||    
T  23133141 aattaagaaattattccttaaaaaagtttaacacttcaatttccgatgcattgaa 23133087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 41370262 - 41370208
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||||||| || |||||||| ||||  |||||||| |||||||||||    
T  41370262 aaattaagaaattatttctcaaaaaagttaaatatttcaattttcaatgcattga 41370208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 48097964 - 48098016
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcatt 369  Q
    ||||||||||||||||  |||||||||| ||||  ||||||||||||| ||||    
T  48097964 aaattaagaaattattctttaaaaaagttaaatagttcaatttccaatacatt 48098016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 53040481 - 53040536
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||||||||||||| |||||||| |||||| ||||||||||||||| ||||||    
T  53040481 aaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattgaa 53040536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 13804941 - 13804887
Alignment:
Q  318 aattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||||||| ||| ||| |||||||||||| |||| |||||||||||||||||    
T  13804941 aattaagaaatcattccttcaaaaagtcaaatacttcgatttccaatgcattgaa 13804887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 52299059 - 52299108
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||||| |||||||||||||||  || ||||||||||||||||||    
T  52299059 aagaaattattccttaaaaaagtcaaaaactccaatttccaatgcattga 52299108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 46547856 - 46547819
Alignment:
Q  335 ttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    |||||||||||||||  |||||||||||||||||||||    
T  46547856 ttaaaaaagtcaaataattcaatttccaatgcattgaa 46547819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 54866333 - 54866289
Alignment:
Q  323 agaaattattacttaaaaaagtcaaattcttcaatttccaatgca 367  Q
    |||||||||||| ||||||| ||||||  ||||||||||||||||    
T  54866333 agaaattattacataaaaaattcaaatgtttcaatttccaatgca 54866289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 22177340 - 22177287
Alignment:
Q  319 attaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    |||||||||| ||| |||||||||||||| | ||||||||||||||||||||||    
T  22177340 attaagaaataatttcttaaaaaagtcaagtacttcaatttccaatgcattgaa 22177287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 40203167 - 40203118
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||||| | ||||||||||||||  ||||||||||||||||||||    
T  40203167 aagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattga 40203118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 6983084 - 6983031
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattg 370  Q
    ||||||||||||||||  |||||| ||||||||  |||||||| ||||||||||    
T  6983084 aaattaagaaattattcattaaaagagtcaaatatttcaattttcaatgcattg 6983031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 45359339 - 45359286
Alignment:
Q  319 attaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||||||| ||| |||||||||| ||||  |||||||| ||||||||||||    
T  45359339 attaagaaattgttatttaaaaaagttaaatagttcaattttcaatgcattgaa 45359286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 271
Target Start/End: Complemental strand, 43766521 - 43766493
Alignment:
Q  243 ttgtttataataatgatcggagggagtac 271  Q
    |||||||||||||||||||||||||||||    
T  43766521 ttgtttataataatgatcggagggagtac 43766493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 9153568 - 9153513
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||||||||||||||  ||||||||| ||||  ||||||||||||||||||||||    
T  9153568 aaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattgaa 9153513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 44330718 - 44330669
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  44330718 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattga 44330669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 44365492 - 44365443
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  44365492 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattga 44365443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 6334766 - 6334712
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||| ||||||||  ||||||| |||||| | ||||||||||||||||||||    
T  6334766 aaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatgcattga 6334712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 8964404 - 8964458
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||| |||||||  |||||||||| ||||  ||||||||||||||||||||    
T  8964404 aaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattga 8964458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 24299225 - 24299175
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgca 367  Q
    |||||||||||||||| |||||||| |||||||| || |||||||||||||    
T  24299225 aaattaagaaattattccttaaaaatgtcaaattttttaatttccaatgca 24299175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 19620004 - 19620054
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgca 367  Q
    ||||||||||||||||  ||||||| |||||| | ||||||||||||||||    
T  19620004 aaattaagaaattattctttaaaaatgtcaaagttttcaatttccaatgca 19620054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 26804105 - 26804059
Alignment:
Q  325 aaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||  ||||||||||||||  |||||||||||||||||||||    
T  26804105 aaattattctttaaaaaagtcaaaaacttcaatttccaatgcattga 26804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 36061591 - 36061541
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    |||||||||||  ||||||||||||||| || | |||||||||||||||||    
T  36061591 aagaaattatttattaaaaaagtcaaatactactatttccaatgcattgaa 36061541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 26402871 - 26402822
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||||| |||||||||||||||  ||||||||| |||| ||||||    
T  26402871 aagaaattattccttaaaaaagtcaaaaacttcaattttcaatacattga 26402822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 8920791 - 8920743
Alignment:
Q  323 agaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||| | || |||||||||||  ||||||||||||||||||||    
T  8920791 agaaattattccatagaaaagtcaaatgtttcaatttccaatgcattga 8920743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 34398169 - 34398113
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaaa 373  Q
    |||| |||| ||||||  ||||||| ||||||| ||||||||| |||||||||||||    
T  34398169 aaatcaagatattattttttaaaaaggtcaaatacttcaattttcaatgcattgaaa 34398113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 34681704 - 34681756
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcatt 369  Q
    |||||| |||||||||  ||| |||||||||||  ||||||||||||||||||    
T  34681704 aaattaggaaattattttttacaaaagtcaaatagttcaatttccaatgcatt 34681756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 34336562 - 34336513
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||  ||||||||||||||  |||||||||||||||||||||    
T  34336562 aagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcattga 34336513  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 44254216 - 44254167
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||| || |||||||||||||||  |||||||||||||||||||||    
T  44254216 aagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattga 44254167  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 37564426 - 37564378
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatg 365  Q
    ||||||||||||||||  |||||||||||||||  ||||||||||||||    
T  37564426 aaattaagaaattattctttaaaaaagtcaaatagttcaatttccaatg 37564378  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 11727996 - 11727942
Alignment:
Q  314 taaaaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcatt 369  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||| |||| ||||    
T  11727996 taaaaattaagaaattatt-ctttaaaaagtcaaatacttcaattttcaatacatt 11727942  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 41106092 - 41106037
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    |||||||||||||| |  |||||||||||||||  |||||||| ||||||||||||    
T  41106092 aaattaagaaattaatcattaaaaaagtcaaatagttcaattttcaatgcattgaa 41106037  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 31844312 - 31844262
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgca 367  Q
    |||||||| ||||||| ||||||||||||||| | || |||||||||||||    
T  31844312 aaattaagtaattattccttaaaaaagtcaaagttttgaatttccaatgca 31844262  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 39691206 - 39691153
Alignment:
Q  319 attaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattgaa 372  Q
    ||||| ||||||||  |||||||||||||||  |||||||| ||||||||||||    
T  39691206 attaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaa 39691153  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 43429706 - 43429755
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||||| |||||||||||||||  ||||||||| |||| ||||||    
T  43429706 aagaaattatttcttaaaaaagtcaaaaacttcaattttcaatccattga 43429755  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 33636736 - 33636780
Alignment:
Q  323 agaaattattacttaaaaaagtcaaattcttcaatttccaatgca 367  Q
    |||||||||| | ||||||||||||||  ||||||||||||||||    
T  33636736 agaaattatttcataaaaaagtcaaatgtttcaatttccaatgca 33636780  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 42760235 - 42760187
Alignment:
Q  323 agaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||| | ||||||| ||||||  ||||||||||||||||||||    
T  42760235 agaaattattccataaaaaaatcaaatgtttcaatttccaatgcattga 42760187  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 22020610 - 22020561
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  22020610 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattga 22020561  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 22055107 - 22055058
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||| ||||||||||||||  || ||||||||||||||||||    
T  22055107 aagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattga 22055058  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 13978721 - 13978672
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    ||||||||||| ||||||||||| |||  |||||||||||||||||||||    
T  13978721 aagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcattga 13978672  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 591313 - 591264
Alignment:
Q  322 aagaaattattacttaaaaaagtcaaattcttcaatttccaatgcattga 371  Q
    |||||||||||  ||||||||||| ||  |||||||||||||||||||||    
T  591313 aagaaattattctttaaaaaagtcgaaaacttcaatttccaatgcattga 591264  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 219202 - 219254
Alignment:
Q  317 aaattaagaaattattacttaaaaaagtcaaattcttcaatttccaatgcatt 369  Q
    |||||| |||||||||  ||| |||||||||||  ||||||||||||||||||    
T  219202 aaattaggaaattattctttacaaaagtcaaatagttcaatttccaatgcatt 219254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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