View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5698-Insertion-3 (Length: 520)

Name: NF5698-Insertion-3
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5698-Insertion-3
NF5698-Insertion-3
[»] chr6 (15 HSPs)
chr6 (6-520)||(7564465-7564979)
chr6 (291-512)||(1470922-1471143)
chr6 (291-511)||(1459540-1459760)
chr6 (289-494)||(370782-370987)
chr6 (279-485)||(176198-176398)
chr6 (280-382)||(1442096-1442198)
chr6 (45-114)||(176599-176668)
chr6 (290-386)||(1453838-1453934)
chr6 (290-386)||(1465530-1465626)
chr6 (79-118)||(370569-370608)
chr6 (427-498)||(1442234-1442305)
chr6 (294-344)||(9819831-9819881)
chr6 (77-118)||(1459314-1459355)
chr6 (294-343)||(9703888-9703937)
chr6 (287-339)||(24417481-24417533)
[»] chr7 (2 HSPs)
chr7 (290-494)||(3926908-3927112)
chr7 (284-344)||(1078152-1078212)
[»] chr4 (3 HSPs)
chr4 (291-383)||(55419742-55419834)
chr4 (289-339)||(22672124-22672174)
chr4 (443-491)||(55419634-55419682)
[»] scaffold0044 (1 HSPs)
scaffold0044 (282-349)||(89137-89204)
[»] chr2 (8 HSPs)
chr2 (284-333)||(6538844-6538893)
chr2 (290-339)||(7160752-7160801)
chr2 (290-339)||(7168688-7168737)
chr2 (282-339)||(7156182-7156239)
chr2 (282-333)||(7174363-7174414)
chr2 (282-349)||(33026651-33026718)
chr2 (282-352)||(11237684-11237754)
chr2 (291-339)||(36577370-36577418)
[»] chr3 (20 HSPs)
chr3 (289-344)||(2442038-2442093)
chr3 (292-349)||(2456243-2456300)
chr3 (284-349)||(9608336-9608401)
chr3 (291-339)||(3754604-3754652)
chr3 (282-349)||(2631351-2631418)
chr3 (289-339)||(4142131-4142181)
chr3 (289-339)||(4157941-4157991)
chr3 (292-349)||(771499-771556)
chr3 (282-347)||(7324421-7324486)
chr3 (292-347)||(2644362-2644417)
chr3 (282-349)||(9561975-9562042)
chr3 (294-345)||(13498222-13498273)
chr3 (289-339)||(803215-803265)
chr3 (289-339)||(1007465-1007515)
chr3 (289-339)||(1022493-1022543)
chr3 (289-339)||(2696729-2696779)
chr3 (291-339)||(2459279-2459327)
chr3 (296-344)||(2502147-2502195)
chr3 (292-344)||(2659152-2659204)
chr3 (284-344)||(12133096-12133156)
[»] chr5 (4 HSPs)
chr5 (291-339)||(11081817-11081865)
chr5 (289-339)||(23766859-23766909)
chr5 (289-339)||(23816707-23816757)
chr5 (294-347)||(20292991-20293044)
[»] chr1 (1 HSPs)
chr1 (282-343)||(51381445-51381506)


Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 6 - 520
Target Start/End: Original strand, 7564465 - 7564979
Alignment:
Q  6 caacattaaataaataacacataagacgaaaacacatatggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaa 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  7564465 caacattaaataaataacacataagacgaaaacacatatggagaatctctgagatccaacatagcaaagcgtgtaggtcaaggtgatacgagactctcaa 7564564  T
Q  106 catagacattagacgagaaatcggtaaaagcgacattttgaatccccgaaatctttacggtaccattcttataattgtaaacatataacttaccacaaaa 205  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564565 catagacattagaggagaaatcggtaaaagcgagattttgaatccccgaaatctttacggtaccattcttataattgtaaacatataacttaccacaaaa 7564664  T
Q  206 gtcaagcaacacttggtcatcctcctcataaataaaaagcagacgtgcatagaaataatcaatgaattctgtgaatggaacactgaacaatttagtccaa 305  Q
    |||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||    
T  7564665 gtcaagcaacacttggtcatcctcctcatagataaaaagcacaggtgcatagcaattatcactgaattctttgaatggaacactgaacaatttagtccaa 7564764  T
Q  306 gaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaacccctaagctaaagt 405  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  7564765 gaatccttgtttccataatccttcataacccaaatattcaaaaaagttgtagtgtgagcaaggacccataagcaatccctacaaacccctaagctaaagt 7564864  T
Q  406 aacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagtcattatc 505  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7564865 aacgcagacgttggtgaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagtcattatc 7564964  T
Q  506 ttgatcttttatgac 520  Q
    |||||||||||||||    
T  7564965 ttgatcttttatgac 7564979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 291 - 512
Target Start/End: Original strand, 1470922 - 1471143
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 390  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | | || |||||||||| ||||||| |||||||| |||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaa 1471021  T
Q  391 cccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccca 490  Q
    |||| |||||||||| ||||||| |||| || | | ||||||| ||||| ||||||||||||||||||||||| ||||||| ||| |||||||||||||     
T  1471022 cccccaagctaaagttacgcagaggttcatctaaatcataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaagaatgacccg 1471121  T
Q  491 tgaagagtcattatcttgatct 512  Q
    |||||||||||| |||||||||    
T  1471122 tgaagagtcattctcttgatct 1471143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 291 - 511
Target Start/End: Original strand, 1459540 - 1459760
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaaa 390  Q
    ||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| | | || |||||||||||||||||| |||||||| |||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaa 1459639  T
Q  391 cccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccca 490  Q
    |||| |||||||||| | ||||| |||| || | ||||||||  ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||     
T  1459640 cccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccg 1459739  T
Q  491 tgaagagtcattatcttgatc 511  Q
    |||||||||||| ||| ||||    
T  1459740 tgaagagtcattctctcgatc 1459760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 289 - 494
Target Start/End: Original strand, 370782 - 370987
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctaca 388  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| ||||||| |||| |||||||||| |||||||||||||||| |    
T  370782 tgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctaga 370881  T
Q  389 aacccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacc 488  Q
    |||| | |||   || | | ||||| |||| || | ||||||||| |||||| |||||||||||||| |||| ||  |||||||||| ||||||||||||    
T  370882 aacctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgacc 370981  T
Q  489 catgaa 494  Q
    ||||||    
T  370982 catgaa 370987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 279 - 485
Target Start/End: Complemental strand, 176398 - 176198
Alignment:
Q  279 aatggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagc 378  Q
    ||||||| | |||||||||||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||   || |||||||||||||||| ||    
T  176398 aatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatatccaaaaaagtttcggtgtgagcaaggacgcataggc 176299  T
Q  379 aatccctacaaacccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaaggga 478  Q
    |||||||| ||||||| ||||| |||| | ||||| ||      | ||||||||| |||||  |||||||  |||| ||||| || ||||||| ||| ||    
T  176298 aatccctagaaacccccaagctgaagttatgcagaggt------agaccataatcgggctgggaaatctcccgatacgactcatttcctaaatgaagaga 176205  T
Q  479 aagaatg 485  Q
    |||||||    
T  176204 aagaatg 176198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 280 - 382
Target Start/End: Original strand, 1442096 - 1442198
Alignment:
Q  280 atggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagca 379  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    |||||||||||| |||||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcataacccatgtatccaaaatagttccgttttgagcaaggatgcataagca 1442195  T
Q  380 atc 382  Q
    |||    
T  1442196 atc 1442198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 176668 - 176599
Alignment:
Q  45 ggagaatctctgagacccaacatagcaaagcgtgtaggtcaaggtgatatgagactctcaacatagacat 114  Q
    ||||||||| ||||| ||| || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  176668 ggagaatctttgagagccagcagagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 1453838 - 1453934
Alignment:
Q  290 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 386  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1453838 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1453934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 1465530 - 1465626
Alignment:
Q  290 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcccta 386  Q
    |||||||||| ||||||| || ||||||||||||| |||||||||||| ||||||||| |     |||  |||||||||| ||||||||||||||||    
T  1465530 gaacaatttattccaagagtctttatttccataatacttcataacccagatatccaaagagtcattagcgtgagcaaggatgcataagcaatcccta 1465626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 370569 - 370608
Alignment:
Q  79 taggtcaaggtgatatgagactctcaacatagacattaga 118  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacattaga 370608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 1442234 - 1442305
Alignment:
Q  427 cataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagt 498  Q
    ||||||| |||  ||||||||||||||||||||| ||  |||||||||| || ||||| | |||||||||||    
T  1442234 cataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagt 1442305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 9819831 - 9819881
Alignment:
Q  294 aatttagtccaagaatccttatttccataatccttcataacccaaatatcc 344  Q
    |||||||||||||| ||  |||||||||| |||||||||| ||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaatatcc 9819881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 1459314 - 1459355
Alignment:
Q  77 tgtaggtcaaggtgatatgagactctcaacatagacattaga 118  Q
    |||||||||||||||||||||||||||  | |||||||||||    
T  1459314 tgtaggtcaaggtgatatgagactctctgcgtagacattaga 1459355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 9703888 - 9703937
Alignment:
Q  294 aatttagtccaagaatccttatttccataatccttcataacccaaatatc 343  Q
    |||||||||||| ||||  |||||||||| |||||||||| |||||||||    
T  9703888 aatttagtccaaaaatctctatttccatattccttcataagccaaatatc 9703937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 24417481 - 24417533
Alignment:
Q  287 actgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    |||| |||||||||||||||| || ||||||||||| || ||||||| |||||    
T  24417481 actgtacaatttagtccaagattctttatttccatattctttcataatccaaa 24417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 290 - 494
Target Start/End: Complemental strand, 3927112 - 3926908
Alignment:
Q  290 gaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatccctacaa 389  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||  ||| | | ||||||| || ||||||||| || ||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaatacccaacaaagtttcagtgtaaacaaggacacacaagcaatccttagaa 3927013  T
Q  390 acccctaagctaaagtaacgcagacgttcgtcaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaagaatgaccc 489  Q
    ||||||||| | |||  | | |   | || |||| |||| |||| ||| |  ||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  3927012 acccctaaggtgaagatatgaaccggatcatcaagaccaaaatcgggccgtgaaatctcttgataggactcgtttcctaaatcaagagaaagaatgaccc 3926913  T
Q  490 atgaa 494  Q
    |||||    
T  3926912 atgaa 3926908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 1078152 - 1078212
Alignment:
Q  284 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 344  Q
    |||| |||||||||||||||| || ||  |||||||||| |||||||||||||||| ||||    
T  1078152 aacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatcc 1078212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 383
Target Start/End: Complemental strand, 55419834 - 55419742
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagttgtagtttgagcaaggacgcataagcaatcc 383  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||   | || ||||||| ||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataaaccttcataagccagatatccaaaaaagaattggtgtgagcaacgacgcataagcaatcc 55419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 22672124 - 22672174
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  22672124 tgaacaatttagtccaagattccttatttccatattccttcattacccaaa 22672174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 55419682 - 55419634
Alignment:
Q  443 aatctcttgataagactcgttacctaaatcaagggaaagaatgacccat 491  Q
    |||| ||||||||||||| || |||||||| || |||||||||||||||    
T  55419682 aatcacttgataagactcatttcctaaatccagagaaagaatgacccat 55419634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 89204 - 89137
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    |||||| || |||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||    
T  89204 ggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 6538893 - 6538844
Alignment:
Q  284 aacactgaacaatttagtccaagaatccttatttccataatccttcataa 333  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  6538893 aacactgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  290 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  290 gaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 7156182 - 7156239
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||| ||||||||||| ||||||||| | ||||||||| |||||||||| |||||    
T  7156182 ggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaa 7156239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 7174363 - 7174414
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataa 333  Q
    ||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||    
T  7174363 ggaacacggaacaatctagtccaagaatcttgatttccatattccttcataa 7174414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 33026718 - 33026651
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    ||||||| | ||||| |||||||||| |  ||||||||||| | |||||||||||||| |||||||||    
T  33026718 ggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaa 33026651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 11237754 - 11237684
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaaagt 352  Q
    ||||||| |||||||||||||||||  ||  |||||||||| |||| ||||| ||||| ||| ||||||||    
T  11237754 ggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagt 11237684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 36577418 - 36577370
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaa 36577370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 2442093 - 2442038
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 344  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||| ||||    
T  2442093 tgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatcc 2442038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 2456300 - 2456243
Alignment:
Q  292 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    |||||||||||||||| || ||||||||||| |||||||||||||||| |||| ||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaa 2456243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 9608336 - 9608401
Alignment:
Q  284 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    ||||||| | |||||||||||||||||  |||||||||| |||||||||||||||| ||| |||||    
T  9608336 aacactgtataatttagtccaagaatctatatttccatattccttcataacccaaacatcaaaaaa 9608401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 3754652 - 3754604
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaa 3754604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 2631418 - 2631351
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    ||||||||| |||||||||||||||| || | ||||||||| |||||||||| ||||| || ||||||    
T  2631418 ggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaa 2631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 4142131 - 4142181
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4142131 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 4157941 - 4157991
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  4157941 tgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 771499 - 771556
Alignment:
Q  292 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    |||||||||||||||| ||  |||||||||| |||||||||||||||| |||| ||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaa 771556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 7324421 - 7324486
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 347  Q
    ||||||||  |||||||||||||||| || |||||||| || |||||||||| ||||| |||||||    
T  7324421 ggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaa 7324486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 2644362 - 2644417
Alignment:
Q  292 acaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 347  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| |||||||    
T  2644362 acaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaa 2644417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 9561975 - 9562042
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatccaaaaa 349  Q
    ||||||||| | |||||||||||||| || | ||||||||| || ||||||| ||||| |||||||||    
T  9561975 ggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaa 9562042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 13498273 - 13498222
Alignment:
Q  294 aatttagtccaagaatccttatttccataatccttcataacccaaatatcca 345  Q
    |||||||||||||| || ||||||||||| |||||||||| ||||| |||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatcca 13498222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 803215 - 803265
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||| ||||||||||| || ||||||||||| || |||||||||||||    
T  803215 tgaacaacttagtccaagactctttatttccatattctttcataacccaaa 803265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 1007515 - 1007465
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1007515 tgaacaatttagtccaggactcgttatttccatattccttcattacccaaa 1007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 1022543 - 1022493
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    |||||||||||||||| || || ||||||||||| |||||||| |||||||    
T  1022543 tgaacaatttagtccatgactcgttatttccatattccttcattacccaaa 1022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 2696729 - 2696779
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||| ||||||| || ||||||||||| |||||||||| |||||    
T  2696729 tgaacaatttaatccaagactctttatttccatattccttcataatccaaa 2696779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 2459327 - 2459279
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    |||||||| |||||||| || ||||||||||| |||||||||| |||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaa 2459279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 2502195 - 2502147
Alignment:
Q  296 tttagtccaagaatccttatttccataatccttcataacccaaatatcc 344  Q
    |||||||||| | |||||||||||||| |||||||||| ||||| ||||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcc 2502147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 2659152 - 2659204
Alignment:
Q  292 acaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 344  Q
    |||||||||||||||| || | ||||||||| |||||||||| ||||| ||||    
T  2659152 acaatttagtccaagactcttgatttccatactccttcataatccaaacatcc 2659204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 12133156 - 12133096
Alignment:
Q  284 aacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatcc 344  Q
    |||| |||||||||||||||| || ||  |||||||||| ||| |||||||||||| ||||    
T  12133156 aacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatcc 12133096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 11081865 - 11081817
Alignment:
Q  291 aacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaa 11081817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 23766859 - 23766909
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23766859 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 23816707 - 23816757
Alignment:
Q  289 tgaacaatttagtccaagaatccttatttccataatccttcataacccaaa 339  Q
    ||||||||||||||||||| || ||||||||||| || ||||||| |||||    
T  23816707 tgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 20293044 - 20292991
Alignment:
Q  294 aatttagtccaagaatccttatttccataatccttcataacccaaatatccaaa 347  Q
    |||||||||||||| || ||| ||||||| |||||||||| ||||| |||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaa 20292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 51381445 - 51381506
Alignment:
Q  282 ggaacactgaacaatttagtccaagaatccttatttccataatccttcataacccaaatatc 343  Q
    |||| ||||||||||||||||||||| || | ||||||||| || ||||||| |||||||||    
T  51381445 ggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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