View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5698_high_10 (Length: 226)

Name: NF5698_high_10
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5698_high_10
NF5698_high_10
[»] chr6 (14 HSPs)
chr6 (18-211)||(28097479-28097672)
chr6 (40-213)||(28326429-28326602)
chr6 (40-213)||(28504065-28504238)
chr6 (40-213)||(28182069-28182242)
chr6 (40-213)||(28227903-28228076)
chr6 (53-213)||(28235516-28235676)
chr6 (27-213)||(28296785-28296971)
chr6 (27-213)||(28515102-28515288)
chr6 (53-128)||(28243831-28243906)
chr6 (56-213)||(29826937-29827094)
chr6 (53-137)||(29523057-29523141)
chr6 (41-127)||(26892649-26892735)
chr6 (43-128)||(26862616-26862701)
chr6 (70-197)||(27697674-27697801)
[»] chr2 (2 HSPs)
chr2 (18-213)||(3280610-3280805)
chr2 (56-213)||(17992289-17992446)
[»] scaffold0038 (3 HSPs)
scaffold0038 (40-213)||(28401-28574)
scaffold0038 (53-213)||(35678-35838)
scaffold0038 (53-128)||(43993-44068)
[»] chr5 (1 HSPs)
chr5 (54-211)||(16691820-16691977)
[»] chr4 (1 HSPs)
chr4 (45-210)||(5090013-5090178)
[»] scaffold0019 (1 HSPs)
scaffold0019 (40-143)||(57352-57455)
[»] chr8 (1 HSPs)
chr8 (41-129)||(16441091-16441179)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 28097479 - 28097672
Alignment:
Q  18 tctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097479 tctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcac 28097578  T
Q  118 caaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttg 211  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097579 caaaccaatcagtccctccagccatagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttg 28097672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 28326602 - 28326429
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  ||||||||| ||||||  |||||| | ||| |||||||||||||| |||||||||||||||| ||| |||||||||   ||||||||    
T  28326602 tttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagc 28326503  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    |||| | ||||  ||||||| ||  | ||  || ||||||||||| |||||||||||| | || ||||||||||    
T  28326502 caaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttctttcggtgaagcctttgct 28326429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 28504238 - 28504065
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  ||||||||| ||||||  |||||| | ||| |||||||||||||| |||||||||||||||| ||| |||||||||   ||||||||    
T  28504238 tttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagc 28504139  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    |||| | ||||  ||||||| ||  | ||  || ||||||||||| |||||||||||| | || ||||||||||    
T  28504138 caaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttctttcggtgaagcctttgct 28504065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 28182242 - 28182069
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||| | ||||||| | ||  |||||||||||||  |||||| |||| |||| ||||||||||||| | ||||||||    
T  28182242 tttcatatgctctttcaatcccatgacctactagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaattcctccagc 28182143  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    |||| | ||||  ||||||| ||  | ||  || || ||||||||||||||||||||| | || ||||||||||    
T  28182142 caaaacctgcaattgcttcagttcgtgaacatcatctagaatcaatagaaccttctttcggtgaagcctttgct 28182069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 28228076 - 28227903
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||||||||||||| | ||| | |||||||||||  |||||| |||| |||| |||||||||||||   ||||||||    
T  28228076 tttcatatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagc 28227977  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    |||| |  |||  ||||| | ||| | ||  || ||||||||||||||||| |||||| | || ||||||||||    
T  28227976 caaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttctttcggtgaagcctttgct 28227903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 28235676 - 28235516
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    |||||||||||||||||||||||| | ||| |||||||||||||  |||||| |||| |||| ||||||||||||| |  |||| |||||| | ||||      
T  28235676 ttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaat 28235577  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    ||||| | ||  | ||  || || |||||||| |||||||||||| | || ||||||||||    
T  28235576 tgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtgaagcctttgct 28235516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 28296785 - 28296971
Alignment:
Q  27 tttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaat 126  Q
    |||||||  ||| ||||||||| |  ||||||||||||||   ||||||| ||||| ||| |||||||||  |||||| |||| |||  |||||||||||    
T  28296785 tttaacttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaat 28296884  T
Q  127 cagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    ||   | |||||||||| ||||||  ||||||| || || ||  || || |||||||| | |||||||||| | || ||||||||||    
T  28296885 caagtcgtccagccaaaacttgcaattgcttcagttcatgaacatcatctagaatcaacaaaaccttctttcggtgaagcctttgct 28296971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 28515288 - 28515102
Alignment:
Q  27 tttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaat 126  Q
    |||||||  ||| ||||||||| |  ||||||||||||||   ||||||| ||||| ||| |||||||||  |||||| |||| |||  |||||||||||    
T  28515288 tttaacttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaat 28515189  T
Q  127 cagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    ||   | |||||||||| ||||||  ||||||| || || ||  || || |||||||| | |||||||||| | || ||||||||||    
T  28515188 caagtcgtccagccaaaacttgcaattgcttcagttcatgaacatcatctagaatcaacaaaaccttctttcggtgaagcctttgct 28515102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 28243906 - 28243831
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 128  Q
    ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| |||||||||    
T  28243906 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatca 28243831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 213
Target Start/End: Complemental strand, 29827094 - 29826937
Alignment:
Q  56 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgc 155  Q
    |||||||||||||| |||||| | ||  |||||||||||||  |||||| | ||||||| |||||||||||||   ||||| |||| | ||||||  |||    
T  29827094 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 29826995  T
Q  156 ttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
     |||  || | || |||||| |||||||| || || |||||| ||  |||||||||||    
T  29826994 ctcatgttgtcaacgtcgtcaagaatcaaaagtactttctttcgtcctagcctttgct 29826937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 29523141 - 29523057
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctcca 137  Q
    |||||||||||||  ||||||||| | ||| || | ||| |||||||| ||||| || |||| ||||||||||||||| ||||||    
T  29523141 ttcaatcccatgaaatgctagcaaatgtttgtcgcaagttgtaacaataactctgctaccagaaccaaaccaatcagttcctcca 29523057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 26892649 - 26892735
Alignment:
Q  41 ttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatc 127  Q
    ||||||||||  ||||||   ||||||||||||||| ||| | |||||||| ||||| ||||||| ||| |||  ||||||||||||    
T  26892649 ttcatatgttttttcaatatgatgacttgctagcaaatttctgtctcgagtagtaacgatcactcgactaccaataccaaaccaatc 26892735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 26862701 - 26862616
Alignment:
Q  43 catatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 128  Q
    ||||||||  ||| |||||||| | || ||| |||| |||||||||||||||||  || |||||||| |||  |||||||||||||    
T  26862701 catatgttctttctatcccatggcatgttagtaagtgtttatctcgagtggtaatgatgactctacttccatgaccaaaccaatca 26862616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 27697674 - 27697801
Alignment:
Q  70 ctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatc-agtccctccagccaaagcttgcagctgcttcaatttattaa 168  Q
    |||| |||| ||||||||| ||||| |  || ||||| || |||| |||||||||||| ||||| |||||||||||| || ||||| | || ||| | ||    
T  27697674 ctagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcc-tccagccaaagcctgtagctgatccagtttgtcaa 27697772  T
Q  169 tgtcgtcgagaatcaatagaaccttcttt 197  Q
      |||||||||||||| |||| |||||||    
T  27697773 catcgtcgagaatcaaaagaatcttcttt 27697801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 3280805 - 3280610
Alignment:
Q  18 tctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcac 117  Q
    |||| ||| |||||||| | | |||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||  ||||| ||||| ||| |||    
T  3280805 tcttccttatttaactcatctatttcatatgttagttcaatcccatgacttgataacaagtgtttgtctcgagtggtaatgatcaccctactaccaacac 3280706  T
Q  118 caaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
     ||||||||||  ||||||||| ||  |||||| |||||||||||  |||| ||| || |||| |||||||||||| ||  | |||||||||||||    
T  3280705 taaaccaatcaagccctccagctaagacttgcacctgcttcaattcgttaacgtcatcaagaaccaatagaacctttttccggtgtagcctttgct 3280610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 17992289 - 17992446
Alignment:
Q  56 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgc 155  Q
    ||||||||||| || || ||| | ||| |||||||||||||  || ||||| ||||||  ||||| |||| ||| | ||||| ||||| | ||||  |||    
T  17992289 aatcccatgacatgttaacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaaccaaaacctgcaattgc 17992388  T
Q  156 ttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    || | ||| |  ||||| ||||||||||| ||||| ||||||||   |||||||||||    
T  17992389 tttagtttgtcgatgtcatcgagaatcaagagaactttcttttgacatagcctttgct 17992446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 28574 - 28401
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||||||||||||| | ||| | |||||||||||  |||||| |||| |||| |||||||||||||   ||||||||    
T  28574 tttcatatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagc 28475  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    |||| |  |||  ||||| | ||| | ||  || ||||||||||||||||| |||||| | || ||||||||||    
T  28474 caaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttctttcggtgaagcctttgct 28401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 35838 - 35678
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    |||||||||||||||||||||||| | ||| |||||||||||||  |||||| |||| |||| ||||||||||||| |  |||| |||||| | ||||      
T  35838 ttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaat 35739  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgct 213  Q
    ||||| | ||  | ||  || || |||||||| |||||||||||| | || ||||||||||    
T  35738 tgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtgaagcctttgct 35678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 44068 - 43993
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 128  Q
    ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| |||||||||    
T  44068 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatca 43993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 16691977 - 16691820
Alignment:
Q  54 tcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagct 153  Q
    ||||| |||||||||| ||| |||| ||| |||||||||||||  || |||||||| |||| |||||||||||| | | ||||| ||| | ||||||  |    
T  16691977 tcaataccatgacttgttagtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaatcgggctctccaaccataacttgcaatt 16691878  T
Q  154 gcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttg 211  Q
    ||||    | || ||  || ||||||||||| |||||||| |||||||||||||||||    
T  16691877 gcttttgctcatcaacatcatcgagaatcaaaagaacctttttttgttgtagcctttg 16691820  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 5090013 - 5090178
Alignment:
Q  45 tatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaag 144  Q
    |||||||  ||||||||||||| |  |||||||| ||| |||||||||||||  || ||||| ||||||  ||||||||||||||   |||| ||||||     
T  5090013 tatgttatatcaatcccatgacattttagcaagtgtttgtctcgagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaa 5090112  T
Q  145 cttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagccttt 210  Q
    | || || || |||| ||| | ||| || ||||||||||| ||||| ||||||  |||||||||||    
T  5090113 cctgtagttgtttcagtttgtcaatatcatcgagaatcaaaagaactttctttctttgtagccttt 5090178  T

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Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 143
Target Start/End: Original strand, 57352 - 57455
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||| ||||||||| | ||  |||||||||||||  |||||| |||| |||| |||||||||||||   ||||||||    
T  57352 tttcatatgctctttcaatcccatgacctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagc 57451  T
Q  140 caaa 143  Q
    ||||    
T  57452 caaa 57455  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 16441179 - 16441091
Alignment:
Q  41 ttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcag 129  Q
    ||||||||||  ||||| |||||||||||||||||| | ||| || ||||| ||||  || ||||| || |||| |||| |||||||||    
T  16441179 ttcatatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaatcag 16441091  T

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