View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5698_high_2 (Length: 352)
Name: NF5698_high_2
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5698_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 120 - 325
Target Start/End: Complemental strand, 186405 - 186201
Alignment:
| Q |
120 |
ttagcattgaaagttgtcgatcgaaaagattgaaaaaacaacaacaataataatatagcatgtgctagacgatttgagaacattccttatctttttgcct |
219 |
Q |
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| T |
186405 |
ttagcattgaaagttgtcgatcgaaaagattgaaaaaacaacaacaataataatatagcatgtgctagacgatttgagaacattccttatctttttgcct |
186306 |
T |
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| Q |
220 |
gacttgttacctttcatttgttggctgtctacgtcaggcctcatagtgcaaaataattttaatatgctccaattgtatgagttggatccaaataaagttt |
319 |
Q |
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| T |
186305 |
gacttgttacctttcatttgttggctgtctacgtcaggcctcatagtgcaaaataattttaatatgctcc-attgtatgagttggatccaaataaagttt |
186207 |
T |
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| Q |
320 |
aagata |
325 |
Q |
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|||||| |
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| T |
186206 |
aagata |
186201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 186641 - 186520
Alignment:
| Q |
1 |
ttgtaccacttgtaagaataatttgtggctactgtttgactaacaataattttatatatgtctaacacaaaatctgcctccagcatcctcatagacccta |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
186641 |
ttgtaccacttataagaataatttgtggctactgtttgactaacaataattttatatatgtctaacacaaaatctgcctccagcgtcctcatagacccta |
186542 |
T |
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| Q |
101 |
aagctaccagtatttttcgtta |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
186541 |
aagctaccagtatttttcgtta |
186520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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