View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5698_low_1 (Length: 686)
Name: NF5698_low_1
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5698_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 470
Target Start/End: Original strand, 45479364 - 45479825
Alignment:
| Q |
14 |
atcatgataaaaattggagaactgaaataatattttttaaaacttaccaaaaatagtatgatcccccagcggaacaagtgcatcttctggccgaatactt |
113 |
Q |
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| T |
45479364 |
atcatgataaaaattggagaactgaaataatattttttaaaacttaccaaaaatagtatgatcccccagtggaacaagtgcatcttctggccgaatactt |
45479463 |
T |
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| Q |
114 |
cattcggtcttcaacatgagtaaatttaacaatattaaattattaataacctttt-tagaatcttagttggaatatgtgcaacttacgaccaaattttga |
212 |
Q |
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| T |
45479464 |
cattcggtcttcaacatgagtaaatttaacaatattaaattattaataactttttttagaatcttagttggaatatgtgcaacttgcgaccaaattttga |
45479563 |
T |
|
| Q |
213 |
attaccaccgtcttctcataaaatcagatgtgtttaattgaggcgtcatacccccacactcacgctaaattttcagttacaaaatactataaaataaaat |
312 |
Q |
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| T |
45479564 |
attaccaccgtcttctcataaaatcagatgtgtttaattgaggcgtcatacccccacactcacgctaaattttcatttacaaaatactataaaataaaat |
45479663 |
T |
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| Q |
313 |
tgttttttagtttggtttgggtgataattaaaattattaagcaataaaatatagactttttggagtacaattttgtgctcgacaaataattatatatga- |
411 |
Q |
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| T |
45479664 |
tgttttttagtttggtttgggtgataattaaaattattaagcaataaaatatagactttttggagtacaattttgtgctcgacaaataattatatatgat |
45479763 |
T |
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| Q |
412 |
---ttttttctatttaagaaaagctatccgtaaatgaattaattatagttgtttgcaaactt |
470 |
Q |
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| T |
45479764 |
tttttttttttatttaagaaaagctatccgtaaatgaattaattatagttgtttgcaaactt |
45479825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 505 - 671
Target Start/End: Original strand, 45479841 - 45480007
Alignment:
| Q |
505 |
tacacatataatgcaggaagaggtagcaagattgatccgcaatttggcaagttcagggtccaaagcagtaaacttaggacaaatgttgaatgtatgcacg |
604 |
Q |
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| T |
45479841 |
tacacatataatgcaggaagaggtagcaagattgatccgcaatttggcaagttcagggtccaaagcagtaaacttaggacaaatgttgaatgtatgcacg |
45479940 |
T |
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| Q |
605 |
acaaacgcattggctagggtaatgataggacggcgagtatttaatgaggggaatggtgggtatgaat |
671 |
Q |
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| T |
45479941 |
acaaacgcattggctagggtaatgataggacggcgagtatttaatgaggggaatggtgggtgtgaat |
45480007 |
T |
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