View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5698_low_4 (Length: 297)

Name: NF5698_low_4
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5698_low_4
NF5698_low_4
[»] chr6 (25 HSPs)
chr6 (18-282)||(28097479-28097743)
chr6 (40-225)||(28326417-28326602)
chr6 (40-225)||(28504053-28504238)
chr6 (53-233)||(28235496-28235676)
chr6 (40-265)||(28182016-28182242)
chr6 (40-232)||(28227884-28228076)
chr6 (27-232)||(28296785-28296990)
chr6 (27-232)||(28515083-28515288)
chr6 (56-229)||(29826921-29827094)
chr6 (53-232)||(28243727-28243906)
chr6 (43-260)||(26862484-26862701)
chr6 (75-255)||(26884979-26885159)
chr6 (53-229)||(26975886-26976062)
chr6 (71-253)||(26656876-26657058)
chr6 (71-253)||(26762847-26763029)
chr6 (54-235)||(28140464-28140645)
chr6 (53-232)||(28186325-28186505)
chr6 (53-137)||(29523057-29523141)
chr6 (174-229)||(27576157-27576212)
chr6 (70-236)||(27697674-27697840)
chr6 (174-236)||(26812456-26812518)
chr6 (41-127)||(26892649-26892735)
chr6 (203-261)||(27530522-27530580)
chr6 (57-263)||(31285460-31285666)
chr6 (84-229)||(28240289-28240434)
[»] chr2 (2 HSPs)
chr2 (18-282)||(3280541-3280805)
chr2 (56-226)||(17992289-17992459)
[»] chr5 (1 HSPs)
chr5 (54-263)||(16691768-16691977)
[»] chr4 (1 HSPs)
chr4 (45-263)||(5090013-5090231)
[»] scaffold0038 (4 HSPs)
scaffold0038 (53-233)||(35658-35838)
scaffold0038 (40-232)||(28382-28574)
scaffold0038 (53-232)||(43889-44068)
scaffold0038 (84-229)||(40451-40596)
[»] scaffold0019 (1 HSPs)
scaffold0019 (40-260)||(57352-57572)
[»] chr1 (3 HSPs)
chr1 (56-262)||(26136790-26136996)
chr1 (203-263)||(28126896-28126956)
chr1 (201-257)||(28163595-28163651)
[»] chr8 (1 HSPs)
chr8 (41-129)||(16441091-16441179)


Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 28097479 - 28097743
Alignment:
Q  18 tctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097479 tctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcac 28097578  T
Q  118 caaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttat 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097579 caaaccaatcagtccctccagccatagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttat 28097678  T
Q  218 gattggaattccctcactagtatctgctaacttaatgtccaatccagcaatcttggaaagcaaat 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28097679 gattggaattccctcactagtatctgctaacttaatgtccaatccaacaatcttggaaagcaaat 28097743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 28326602 - 28326417
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  ||||||||| ||||||  |||||| | ||| |||||||||||||| |||||||||||||||| ||| |||||||||   ||||||||    
T  28326602 tttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagc 28326503  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaa 225  Q
    |||| | ||||  ||||||| ||  | ||  || ||||||||||| |||||||||||| | || |||||||| |||||||||||||    
T  28326502 caaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaa 28326417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 225
Target Start/End: Complemental strand, 28504238 - 28504053
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  ||||||||| ||||||  |||||| | ||| |||||||||||||| |||||||||||||||| ||| |||||||||   ||||||||    
T  28504238 tttcatatgctctttcaatcccgtgactttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagc 28504139  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaa 225  Q
    |||| | ||||  ||||||| ||  | ||  || ||||||||||| |||||||||||| | || |||||||| |||||||||||||    
T  28504138 caaaacctgcaattgcttcagttcgtgaacatcatcgagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaa 28504053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 28235676 - 28235496
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    |||||||||||||||||||||||| | ||| |||||||||||||  |||||| |||| |||| ||||||||||||| |  |||| |||||| | ||||      
T  28235676 ttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaat 28235577  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctca 233  Q
    ||||| | ||  | ||  || || |||||||| |||||||||||| | || |||||||| |||||||||||||||||||||    
T  28235576 tgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaattccctca 28235496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 28182242 - 28182016
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||| | ||||||| | ||  |||||||||||||  |||||| |||| |||| ||||||||||||| | ||||||||    
T  28182242 tttcatatgctctttcaatcccatgacctactagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaattcctccagc 28182143  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttg-ttttatgattggaattccctcactagt 238  Q
    |||| | ||||  ||||||| ||  | ||  || || ||||||||||||||||||||| | || |||||||| ||||||||||||| |||||||  |       
T  28182142 caaaacctgcaattgcttcagttcgtgaacatcatctagaatcaatagaaccttctttcggtgaagcctttgcttttatgattggagttccctcgttgac 28182043  T
Q  239 atctgctaacttaatgtccaatccagc 265  Q
    |||| ||||||||| ||||||| ||||    
T  28182042 atctcctaacttaacgtccaattcagc 28182016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 28228076 - 28227884
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||||||||||||| | ||| | |||||||||||  |||||| |||| |||| |||||||||||||   ||||||||    
T  28228076 tttcatatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagc 28227977  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctc 232  Q
    |||| |  |||  ||||| | ||| | ||  || ||||||||||||||||| |||||| | || |||||||| |||| || ||||||||||||    
T  28227976 caaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttctttcggtgaagcctttgctttaagactggaattccctc 28227884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 232
Target Start/End: Original strand, 28296785 - 28296990
Alignment:
Q  27 tttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaat 126  Q
    |||||||  ||| ||||||||| |  ||||||||||||||   ||||||| ||||| ||| |||||||||  |||||| |||| |||  |||||||||||    
T  28296785 tttaacttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaat 28296884  T
Q  127 cagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaat 226  Q
    ||   | |||||||||| ||||||  ||||||| || || ||  || || |||||||| | |||||||||| | || |||||||| ||||||||||||||    
T  28296885 caagtcgtccagccaaaacttgcaattgcttcagttcatgaacatcatctagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaat 28296984  T
Q  227 tccctc 232  Q
    ||||||    
T  28296985 tccctc 28296990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 28515288 - 28515083
Alignment:
Q  27 tttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaat 126  Q
    |||||||  ||| ||||||||| |  ||||||||||||||   ||||||| ||||| ||| |||||||||  |||||| |||| |||  |||||||||||    
T  28515288 tttaacttatgtatttcatatgctctttcaatcccatgaccatctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaat 28515189  T
Q  127 cagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaat 226  Q
    ||   | |||||||||| ||||||  ||||||| || || ||  || || |||||||| | |||||||||| | || |||||||| ||||||||||||||    
T  28515188 caagtcgtccagccaaaacttgcaattgcttcagttcatgaacatcatctagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaat 28515089  T
Q  227 tccctc 232  Q
    ||||||    
T  28515088 tccctc 28515083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 29827094 - 29826921
Alignment:
Q  56 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgc 155  Q
    |||||||||||||| |||||| | ||  |||||||||||||  |||||| | ||||||| |||||||||||||   ||||| |||| | ||||||  |||    
T  29827094 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 29826995  T
Q  156 ttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattcc 229  Q
     |||  || | || |||||| |||||||| || || |||||| ||  ||||||||| ||||| |||||||||||    
T  29826994 ctcatgttgtcaacgtcgtcaagaatcaaaagtactttctttcgtcctagcctttgctttattattggaattcc 29826921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 28243906 - 28243727
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| |||||||||   |||||||| ||| | ||||      
T  28243906 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaacctgcaat 28243807  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctc 232  Q
    ||||||| ||  | ||  || |||||||| |  |||||||| ||| | || |||||||  ||||| ||||||||||||||    
T  28243806 tgcttcagttcgtgaacatcatcgagaattagcagaaccttgtttcggtgaagccttttctttattattggaattccctc 28243727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 260
Target Start/End: Complemental strand, 26862701 - 26862484
Alignment:
Q  43 catatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaa 142  Q
    ||||||||  ||| |||||||| | || ||| |||| |||||||||||||||||  || |||||||| |||  |||||||||||||   |||||||| ||    
T  26862701 catatgttctttctatcccatggcatgttagtaagtgtttatctcgagtggtaatgatgactctacttccatgaccaaaccaatcaagtcctccagctaa 26862602  T
Q  143 agcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatct 242  Q
     || |  ||||| | || ||| | ||  || ||||||||||| |||| |||| ||   | ||| ||||  ||||| | ||||||||||||||||| ||||    
T  26862601 tgcctctagctgttccagtttgtcaacatcatcgagaatcaaaagaatcttcattctatttagtctttcctttataagtggaattccctcactagcatct 26862502  T
Q  243 gctaacttaatgtccaat 260  Q
     |||||||||||| ||||    
T  26862501 cctaacttaatgttcaat 26862484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 255
Target Start/End: Complemental strand, 26885159 - 26884979
Alignment:
Q  75 aagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgt 174  Q
    |||| |||||| ||||||||||  || || || || |||  |||||||||||||   |||||||||||||| |  ||||||| || ||| | ||  || |    
T  26885159 aagtgtttatcacgagtggtaatgatgaccctgcttccacgaccaaaccaatcaagtcctccagccaaagcctctagctgctccattttgtcaacatcat 26885060  T
Q  175 cgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaatgt 255  Q
    | |||||||| |||| |||||||   ||||| ||||  ||||||| ||||||||||||||||  |||| ||||||||||||    
T  26885059 caagaatcaaaagaatcttctttctatgtagtctttcctttatgagtggaattccctcactaacatctcctaacttaatgt 26884979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 26976062 - 26975886
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    |||||||| ||||| || |||||| | ||| |||||||||||||  || ||||| ||||||  ||||| |||| ||| | ||||   |||| | ||||      
T  26976062 ttcaatccgatgacctgatagcaattgtttgtctcgagtggtaatgatgactctgctgccatgaccaagccaaccaggctctccgatcaaaacctgcaat 26975963  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattcc 229  Q
    ||||| | ||| | |||||| ||||||||||| | ||| ||||| || | ||||||| |||||||||||||||||||    
T  26975962 tgctttattttgtcaatgtcatcgagaatcaacaaaactttcttctgatatagccttcgttttatgattggaattcc 26975886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 26657058 - 26656876
Alignment:
Q  71 tagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatg 170  Q
    |||||||| |||||||| ||||||||  || ||||| || |||  ||| |||||||||   ||||| |||||||| |  ||||||| || ||| | ||      
T  26657058 tagcaagtgtttatctctagtggtaatgatgactctgcttccacaaccgaaccaatcaagtcctcctgccaaagcctctagctgctccagtttgtcaaca 26656959  T
Q  171 tcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaat 253  Q
    || ||||||||||| |||| |||||||     ||| ||||  ||||||||||||||||||||||||  |||| ||||||||||    
T  26656958 tcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctcactaacatctcctaacttaat 26656876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 26763029 - 26762847
Alignment:
Q  71 tagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatg 170  Q
    |||||||| |||||||| ||||||||  || ||||| || |||  ||| |||||||||   ||||| |||||||| |  ||||||| || ||| | ||      
T  26763029 tagcaagtgtttatctctagtggtaatgatgactctgcttccacaaccgaaccaatcaagtcctcctgccaaagcctctagctgctccagtttgtcaaca 26762930  T
Q  171 tcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaat 253  Q
    || ||||||||||| |||| |||||||     ||| ||||  ||||||||||||||||||||||||  |||| ||||||||||    
T  26762929 tcatcgagaatcaaaagaatcttctttctagatagtctttcctttatgattggaattccctcactaacatctcctaacttaat 26762847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 28140645 - 28140464
Alignment:
Q  54 tcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagct 153  Q
    ||||||||||||| ||||||||| | ||| |||||||| ||||| |  || | ||| |||  ||||| ||||| ||   ||||||||||| | | || ||    
T  28140645 tcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaact 28140546  T
Q  154 gcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcact 235  Q
    | || | || || || ||| ||||||||||| |||||||||||| || |||||||||  ||||| ||||| ||||| |||||    
T  28140545 gttttagttcatcaacgtcatcgagaatcaaaagaaccttctttagtcgtagcctttcctttattattggtattccttcact 28140464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 28186505 - 28186325
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    |||||||||||||   |||||||| | ||| |||||||||||||  |||||  |||| |||| ||||||||||  |   |||||||||||| ||| || |    
T  28186505 ttcaatcccatgatgagctagcaattgtttgtctcgagtggtaatgatcacaatactaccaggaccaaaccaacgaaatcctccagccaaaacttccaac 28186406  T
Q  153 tg-cttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctc 232  Q
    || ||| | ||  | ||  || ||||||||||| | |||||||||||| || |||||||  | ||||||||||||||||||    
T  28186405 tggctttagttcgtgaacatcatcgagaatcaacaaaaccttcttttggtgaagccttttctctatgattggaattccctc 28186325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 29523141 - 29523057
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctcca 137  Q
    |||||||||||||  ||||||||| | ||| || | ||| |||||||| ||||| || |||| ||||||||||||||| ||||||    
T  29523141 ttcaatcccatgaaatgctagcaaatgtttgtcgcaagttgtaacaataactctgctaccagaaccaaaccaatcagttcctcca 29523057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 27576157 - 27576212
Alignment:
Q  174 tcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattcc 229  Q
    ||||||||||| | ||| ||||||   |||||||||||||||||||||||||||||    
T  27576157 tcgagaatcaacaaaactttctttgtatgtagcctttgttttatgattggaattcc 27576212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 27697674 - 27697840
Alignment:
Q  70 ctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatc-agtccctccagccaaagcttgcagctgcttcaatttattaa 168  Q
    |||| |||| ||||||||| ||||| |  || ||||| || |||| |||||||||||| ||||| |||||||||||| || ||||| | || ||| | ||    
T  27697674 ctagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcc-tccagccaaagcctgtagctgatccagtttgtcaa 27697772  T
Q  169 tgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcacta 236  Q
      |||||||||||||| |||| |||||||     ||||||||  || |||||||||||||| ||||||    
T  27697773 catcgtcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccgtcacta 27697840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 26812518 - 26812456
Alignment:
Q  174 tcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcacta 236  Q
    ||||||||||| | ||| |||||||| || ||||| | |||||||||||||||||| ||||||    
T  26812518 tcgagaatcaacaaaactttcttttgatgcagcctatcttttatgattggaattccttcacta 26812456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 26892649 - 26892735
Alignment:
Q  41 ttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatc 127  Q
    ||||||||||  ||||||   ||||||||||||||| ||| | |||||||| ||||| ||||||| ||| |||  ||||||||||||    
T  26892649 ttcatatgttttttcaatatgatgacttgctagcaaatttctgtctcgagtagtaacgatcactcgactaccaataccaaaccaatc 26892735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 27530522 - 27530580
Alignment:
Q  203 tagcctttgttttatgattggaattccctcactagtatctgctaacttaatgtccaatc 261  Q
    ||||||||| || |||||||||||||||| ||||  | || ||||||||||||||||||    
T  27530522 tagcctttgcttaatgattggaattccctgactaacacctcctaacttaatgtccaatc 27530580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 263
Target Start/End: Complemental strand, 31285666 - 31285460
Alignment:
Q  57 atcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgct 156  Q
    |||||||||||   ||| |||| ||| |||||||||||||  || ||||| || |||   || |||||||||   |||||||||||||| ||||| || |    
T  31285666 atcccatgactacttagtaagtgtttgtctcgagtggtaatgatgactctgcttccacggccgaaccaatcaagtcctccagccaaagcatgcagttgat 31285567  T
Q  157 tcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaatgtc 256  Q
    |||  || | ||  || ||||||||||| |||| |||||||     ||||||||  || |||||||||||||||||||||  ||   |||||||||| ||    
T  31285566 tcatattgtcaacatcatcgagaatcaaaagaatcttctttctacatagcctttccttaatgattggaattccctcactaacatggtctaacttaatttc 31285467  T
Q  257 caatcca 263  Q
    |||||||    
T  31285466 caatcca 31285460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 28240434 - 28240289
Alignment:
Q  84 tctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatca 183  Q
    |||||||||||||  || ||||| ||| ||| ||  |||||||||  ||||||||||||| | ||||| ||||||| || ||  || |  || |||||||    
T  28240434 tctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagccaaaccctgcagttgcttcagttcatccatattatctagaatca 28240335  T
Q  184 atagaaccttcttttgttgtagcctttgttttatgattggaattcc 229  Q
    | ||||| ||||| || |||||  |||| |||||||| ||||||||    
T  28240334 aaagaacattcttatggtgtaggatttgctttatgataggaattcc 28240289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 3280805 - 3280541
Alignment:
Q  18 tctttcttgtttaactcgtgtgtttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcac 117  Q
    |||| ||| |||||||| | | |||||||||||| ||||||||||||||||| || ||||| ||| |||||||||||||  ||||| ||||| ||| |||    
T  3280805 tcttccttatttaactcatctatttcatatgttagttcaatcccatgacttgataacaagtgtttgtctcgagtggtaatgatcaccctactaccaacac 3280706  T
Q  118 caaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttat 217  Q
     ||||||||||  ||||||||| ||  |||||| |||||||||||  |||| ||| || |||| |||||||||||| ||  | ||||||||||| |||||    
T  3280705 taaaccaatcaagccctccagctaagacttgcacctgcttcaattcgttaacgtcatcaagaaccaatagaacctttttccggtgtagcctttgctttat 3280606  T
Q  218 gattggaattccctcactagtatctgctaacttaatgtccaatccagcaatcttggaaagcaaat 282  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||| || | |||||||| ||||    
T  3280605 gattggaattccctcactactatctcctaacttaatgtccaatccaacagttttggaaagaaaat 3280541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 17992289 - 17992459
Alignment:
Q  56 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgc 155  Q
    ||||||||||| || || ||| | ||| |||||||||||||  || ||||| ||||||  ||||| |||| ||| | ||||| ||||| | ||||  |||    
T  17992289 aatcccatgacatgttaacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaaccaaaacctgcaattgc 17992388  T
Q  156 ttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaat 226  Q
    || | ||| |  ||||| ||||||||||| ||||| ||||||||   ||||||||| ||||||||||||||    
T  17992389 tttagtttgtcgatgtcatcgagaatcaagagaactttcttttgacatagcctttgctttatgattggaat 17992459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 263
Target Start/End: Complemental strand, 16691977 - 16691768
Alignment:
Q  54 tcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagct 153  Q
    ||||| |||||||||| ||| |||| ||| |||||||||||||  || |||||||| |||| |||||||||||| | | ||||| ||| | ||||||  |    
T  16691977 tcaataccatgacttgttagtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaatcgggctctccaaccataacttgcaatt 16691878  T
Q  154 gcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaat 253  Q
    ||||    | || ||  || ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||  || | ||||||||||    
T  16691877 gcttttgctcatcaacatcatcgagaatcaaaagaacctttttttgttgtagcctttgttttattattggaattccttcactaacatgtcctaacttaat 16691778  T
Q  254 gtccaatcca 263  Q
    ||| ||||||    
T  16691777 gtctaatcca 16691768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 263
Target Start/End: Original strand, 5090013 - 5090231
Alignment:
Q  45 tatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaag 144  Q
    |||||||  ||||||||||||| |  |||||||| ||| |||||||||||||  || ||||| ||||||  ||||||||||||||   |||| ||||||     
T  5090013 tatgttatatcaatcccatgacattttagcaagtgtttgtctcgagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaa 5090112  T
Q  145 cttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgc 244  Q
    | || || || |||| ||| | ||| || ||||||||||| ||||| ||||||  |||||||||||  |||||||||||||||||||||||  ||||| |    
T  5090113 cctgtagttgtttcagtttgtcaatatcatcgagaatcaaaagaactttctttctttgtagccttttctttatgattggaattccctcactgatatctcc 5090212  T
Q  245 taacttaatgtccaatcca 263  Q
     ||| |||| |||||||||    
T  5090213 aaacctaatttccaatcca 5090231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 35838 - 35658
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    |||||||||||||||||||||||| | ||| |||||||||||||  |||||| |||| |||| ||||||||||||| |  |||| |||||| | ||||      
T  35838 ttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaat 35739  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctca 233  Q
    ||||| | ||  | ||  || || |||||||| |||||||||||| | || |||||||| |||||||||||||||||||||    
T  35738 tgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtgaagcctttgctttatgattggaattccctca 35658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 28574 - 28382
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||||||||||||| | ||| | |||||||||||  |||||| |||| |||| |||||||||||||   ||||||||    
T  28574 tttcatatgctctttcaatcccatgacttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagc 28475  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctc 232  Q
    |||| |  |||  ||||| | ||| | ||  || ||||||||||||||||| |||||| | || |||||||| |||| || ||||||||||||    
T  28474 caaaacccgcaattgctttagtttgtgaacatcatcgagaatcaatagaactttctttcggtgaagcctttgctttaagactggaattccctc 28382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 44068 - 43889
Alignment:
Q  53 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagc 152  Q
    ||||||||||||||||  |||||| | | | |||||||||||||| ||||||||||| |||| ||| |||||||||   |||||||| ||| | ||||      
T  44068 ttcaatcccatgactttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaacctgcaat 43969  T
Q  153 tgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctc 232  Q
    ||||||| ||  | ||  || |||||||| |  |||||||| ||| | || |||||||  ||||| ||||||||||||||    
T  43968 tgcttcagttcgtgaacatcatcgagaattagcagaaccttgtttcggtgaagccttttctttattattggaattccctc 43889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 40596 - 40451
Alignment:
Q  84 tctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgcttcaatttattaatgtcgtcgagaatca 183  Q
    |||||||||||||  || ||||| ||| ||| ||  |||||||||  ||||||||||||| | ||||| ||||||| || ||  || |  || |||||||    
T  40596 tctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagccaaaccctgcagttgcttcagttcatccatattatctagaatca 40497  T
Q  184 atagaaccttcttttgttgtagcctttgttttatgattggaattcc 229  Q
    | ||||| ||||| || |||||  |||| |||||||| ||||||||    
T  40496 aaagaacattcttatggtgtaggatttgctttatgataggaattcc 40451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 260
Target Start/End: Original strand, 57352 - 57572
Alignment:
Q  40 tttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagc 139  Q
    ||||||||| |  |||||||||||||| ||||||||| | ||  |||||||||||||  |||||| |||| |||| |||||||||||||   ||||||||    
T  57352 tttcatatgctctttcaatcccatgacctgctagcaattgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagc 57451  T
Q  140 caaagcttgcagctgcttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagta 239  Q
    |||| | || |  |||||||  |  | ||  || ||||||||||| | |||||||||| | || |||||||| ||||||||||||||||||||  |   |    
T  57452 caaaacctgtaattgcttcagctcgtgaacatcatcgagaatcaacaaaaccttctttcggtgaagcctttgctttatgattggaattccctcgttgaca 57551  T
Q  240 tctgctaacttaatgtccaat 260  Q
    ||| |||||||||||||||||    
T  57552 tctactaacttaatgtccaat 57572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 262
Target Start/End: Complemental strand, 26136996 - 26136790
Alignment:
Q  56 aatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcagtccctccagccaaagcttgcagctgc 155  Q
    ||||||||||| || |||||| | ||| ||||| |||||||  || |||||||| |||| ||||| ||||  || | ||||| ||||| | |||| ||||    
T  26136996 aatcccatgacatgatagcaaatgtttgtctcgggtggtaatgatgactctactcccaggaccaagccaactaggctctccaaccaaaacctgcaactgc 26136897  T
Q  156 ttcaatttattaatgtcgtcgagaatcaatagaaccttcttttgttgtagcctttgttttatgattggaattccctcactagtatctgctaacttaatgt 255  Q
    || |  || | || ||| ||||||||||| | ||  |||||||| |||||||||| |||||||||||||||||| | ||||  || | |||||||||| |    
T  26136896 tttagcttgtcaacgtcatcgagaatcaacaaaattttcttttgatgtagcctttcttttatgattggaattcctttactaacatgtcctaacttaatct 26136797  T
Q  256 ccaatcc 262  Q
    |||||||    
T  26136796 ccaatcc 26136790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 28126896 - 28126956
Alignment:
Q  203 tagcctttgttttatgattggaattccctcactagtatctgctaacttaatgtccaatcca 263  Q
    |||||||||||||||||||| |||||||||||||  | || ||||||||||||||||||||    
T  28126896 tagcctttgttttatgattgcaattccctcactaacacctcctaacttaatgtccaatcca 28126956  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 257
Target Start/End: Original strand, 28163595 - 28163651
Alignment:
Q  201 tgtagcctttgttttatgattggaattccctcactagtatctgctaacttaatgtcc 257  Q
    |||||||||||||||||||||| |||||||||||||  | || ||||||||||||||    
T  28163595 tgtagcctttgttttatgattgtaattccctcactaacacctcctaacttaatgtcc 28163651  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 16441179 - 16441091
Alignment:
Q  41 ttcatatgttacttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatcag 129  Q
    ||||||||||  ||||| |||||||||||||||||| | ||| || ||||| ||||  || ||||| || |||| |||| |||||||||    
T  16441179 ttcatatgttctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaatcag 16441091  T

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