View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5698_low_5 (Length: 273)
Name: NF5698_low_5
Description: NF5698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5698_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 113 - 255
Target Start/End: Original strand, 7564329 - 7564471
Alignment:
| Q |
113 |
atcaatggaatctgtgaatgcaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca |
212 |
Q |
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| T |
7564329 |
atcaatggaatctgtgaatggaacaattgggtgattgctaatgctcatagagaatgaaacaatataaattcatgacagtaaataaatattacagagaaca |
7564428 |
T |
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| Q |
213 |
gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacatt |
255 |
Q |
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| T |
7564429 |
gtaccaatatgtagaaaaatagcaaaaaactcaaagcaacatt |
7564471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 7564274 - 7564330
Alignment:
| Q |
11 |
aagcataggcataaccacctctcattaattagcaagataaaggttaatagtatcaat |
67 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7564274 |
aagcataagcataaccacctctcattaagtagcaagataaaggttaatagtatcaat |
7564330 |
T |
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