View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5699-Insertion-2 (Length: 1043)
Name: NF5699-Insertion-2
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5699-Insertion-2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 655
Target Start/End: Original strand, 22506137 - 22506775
Alignment:
| Q |
9 |
tagtcgcatatttgattcaaccatggctgatcctgcagtacaagtcttgctctcatatcactgtctaaccggtatatatattattcaatatattgtttct |
108 |
Q |
| |
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|||| |||||||||||| |||||||||| ||| ||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |
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| T |
22506137 |
tagtagcatatttgatttaaccatggcttatcgtgcagtaaaagccttgctctcatatcactgcctaactggtatatatattattcaatata--gtttct |
22506234 |
T |
|
| Q |
109 |
cattgtgactctttattttgatgttttctaacataatctttgtaatgtttgcgtgtaacaccattgatccggaacccagtcacgaaggttgataagatt- |
207 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |||||||||||||| |
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| T |
22506235 |
catcgtgactctttattttgatgttttctaacataatctttataatgtttgcgtgtaacaccattgatccgaaaccca----cggaggttgataagattt |
22506330 |
T |
|
| Q |
208 |
atcaattccctgatgttgaagtataggacatacagagtggaatagactctattgggattggtgacgtcaaatctggacaagcatctgttacgcagccaac |
307 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22506331 |
atcaattccttgatgttgaaatataggacatacagagtggaatagactctattgggattggtgacgtcaaatctggacaagcatttgttacgcagccaac |
22506430 |
T |
|
| Q |
308 |
aaagatggtgcgtgtgaagattgaaccaaaggacaagtaatcatgaatcgcccaaggaaaatgttttcataagtatttttgtttctatgtctagtgtttg |
407 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22506431 |
aaagatggtgtgtgtgaagattgaacccaaggacaagtaatcatgaatcacccaaggaaaatgttttcataagtatttttgtttctatgtctggtgtttg |
22506530 |
T |
|
| Q |
408 |
ggtaatgttttgatggttacttttcctttgtactgctat-aagtgnnnnnnngtttggctactttcaataacgaaccttttacattgtcctcttatattc |
506 |
Q |
| |
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|||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
22506531 |
ggtaatgtttagatggctacttttcctttgtactgctattaagtgtttttttgtttggctactttcaataacgaatcttttacattgtcctcttatattc |
22506630 |
T |
|
| Q |
507 |
aaaatgcaatgaaaaatcagtgttttgggttgtcgtcaactaagtatatgttgttattagttgtttcaatcgtttttagtcgtgattattttgcacgtta |
606 |
Q |
| |
|
||| ||||||||||||||| |||||| || || | || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
22506631 |
aaagtgcaatgaaaaatcaaagttttgtgtagt----atatacgtatatgttgttattagttgtttcaatcgtttttagtcgtgattgttttgcacatta |
22506726 |
T |
|
| Q |
607 |
tgtggttggttgtttgcttcggcattcatatacgttgataatgatctgc |
655 |
Q |
| |
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||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
22506727 |
tgttgttggttgtttgcttcggcattcacatacgttgataatgatctgc |
22506775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 841 - 1029
Target Start/End: Original strand, 22508569 - 22508750
Alignment:
| Q |
841 |
gtaggttgcggtcaactatgccataactgacacatgtaagcaagaaaagaacattgtctctaatgccctatcagaatcatagctcatccaacatatactc |
940 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||| |||||||||||||||||| |||||| |
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|
| T |
22508569 |
gtaggttgtggtcaactatgccataacttacacatgtaagctagaaaagaccattgtctctaatgccctttcaaaatcatagctcatccaacctatacta |
22508668 |
T |
|
| Q |
941 |
attaatcttatgcagcttctttatgttgttcacacactttaaattgggatcgaactgcaacaatttaaaaataggctaaaatatgattt |
1029 |
Q |
| |
|
||||||||||||| | | |||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
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| T |
22508669 |
attaatcttatgcgg------tcggttgttcacacactttaaattgggattgaactgcaacaa-ttaaaaataggttaaaatatgattt |
22508750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 721 - 819
Target Start/End: Original strand, 22506837 - 22506935
Alignment:
| Q |
721 |
attcaatgataaattttagaaagtattatcaagaatattaagaagatacgaaaatttaacttagtagatttatactattaaggcttgaattagtaaaaa |
819 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
22506837 |
attcaatgataaattttagaaagcattatcaagaatattaagaagatacgaaaatttgacttagtaaatttatactattaaggcttgaattagtaaaaa |
22506935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 9e-36; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 509 - 650
Target Start/End: Complemental strand, 12853683 - 12853544
Alignment:
| Q |
509 |
aatgcaatgaaaaatcagtgttttgggttgtcgtcaactaagtatatgttgttattagttgtttcaatcgtttttagtcgtgattattttgcacgttatg |
608 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||| | ||||| |||||| | ||||||||||||| |
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|
| T |
12853683 |
aatgcaatgaaaaatcagttttttatgttgtcgtcaactaagaatatgtcgttattagttgtttcaagcattttttgtcgtg-tgattttgcacgtta-c |
12853586 |
T |
|
| Q |
609 |
tggttggttgtttgcttcggcattcatatacgttgataatga |
650 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12853585 |
aggttggttgtttgcttcggcattcacatacgttgataatga |
12853544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 49447411 - 49447552
Alignment:
| Q |
5 |
acagtagtcgcatatttgattcaaccatggctgatcctgcagtacaagtcttgctctcatatcactgtctaaccggtatatatattattcaatatattgt |
104 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
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|
| T |
49447411 |
acagtagtcgcatatttga------catggttgatcgtgccgtagaagtcttgctctcatatcactgcctaaccggtatatatattattcaaaata--gg |
49447502 |
T |
|
| Q |
105 |
ttctcattgtgactctttattttgatgttttctaacataatctttgtaat |
154 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||| |||||||| |
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|
| T |
49447503 |
ttctcagcgtgactctttattttgacgttttctaacagaatgtttgtaat |
49447552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 52166956 - 52167057
Alignment:
| Q |
250 |
tagactctattgggattggtgacgtcaaatctggacaagcatctgttacgcagccaacaaagatggtgcgtgtgaagattgaaccaaaggacaagtaatc |
349 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
52166956 |
tagactctattggggttggtgacgtggaaactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattaaaccaaaggacaagtaatc |
52167055 |
T |
|
| Q |
350 |
at |
351 |
Q |
| |
|
|| |
|
|
| T |
52167056 |
at |
52167057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 42153803 - 42153700
Alignment:
| Q |
18 |
atttgattcaaccatggctgatcctgcagtacaagtcttgctctcatatcactgtctaaccggtatatatattattcaatatattgtttctcattgtgac |
117 |
Q |
| |
|
||||||||||||||||| ||||| |||| || || |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
42153803 |
atttgattcaaccatggttgatcgtgcaatagaaaccttgctatcatatcattgtctaaccggtatatatattattcaatata--gtttctcagcgtgac |
42153706 |
T |
|
| Q |
118 |
tcttta |
123 |
Q |
| |
|
|||||| |
|
|
| T |
42153705 |
tcttta |
42153700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 721 - 808
Target Start/End: Complemental strand, 12853477 - 12853390
Alignment:
| Q |
721 |
attcaatgataaattttagaaagtattatcaagaatattaagaagatacgaaaatttaacttagtagatttatactattaaggcttga |
808 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| ||||||| ||||||| | |||||| | |||||||||||||| |||| |
|
|
| T |
12853477 |
attcaatgataaattttagaaagctttttcaagaatattaaaaagatacaaaaatttgaattagtaaaattatactattaaggtttga |
12853390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 3e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23840951 - 23841169
Alignment:
| Q |
18 |
atttgattcaaccatggctgatcctgcagtacaagtcttgctctcatatcactgtctaaccggtatatatattattcaatatattgtttctcattgtgac |
117 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||| |||| |||| |||||||| |||| |||||||||||| |||||| || | |||| || ||| |
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|
| T |
23840951 |
atttgattcaaccatagctgatcgtgcagtagaagccttgttctcctatcactgcctaatcggtatatatatcattcaagttaat--ttct-atgttga- |
23841046 |
T |
|
| Q |
118 |
tctttattttgatgttttctaacataatctttgtaatgtttgcgtgtaacaccattgatccggaacccagtcacgaaggttgataagattatcaattccc |
217 |
Q |
| |
|
| |||||||||| ||||||||||| | |||||||||||| |||||||| |||||||||||| ||| |||||||| ||||||| |||||||||||||||| |
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|
| T |
23841047 |
tgtttattttgacgttttctaacagattctttgtaatgtctgcgtgtagcaccattgatccagaa-ccagtcacagaggttgacaagattatcaattccc |
23841145 |
T |
|
| Q |
218 |
tgatgttgaagtataggacataca |
241 |
Q |
| |
|
| ||||||||||| |||||||| |
|
|
| T |
23841146 |
tacggttgaagtatatgacataca |
23841169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 724 - 808
Target Start/End: Original strand, 23841792 - 23841876
Alignment:
| Q |
724 |
caatgataaattttagaaagtattatcaagaatattaagaagatacgaaaatttaacttagtagatttatactattaaggcttga |
808 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| ||||||| ||||||| | |||||| | ||||| ||||||||||||| |
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|
| T |
23841792 |
caatgataaattttagaaagaatcatcaagaatattaaaaagatacaaaaatttgaattagtaaaattataatattaaggcttga |
23841876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 586 - 651
Target Start/End: Original strand, 23841661 - 23841726
Alignment:
| Q |
586 |
tcgtgattattttgcacgttatgtggttggttgtttgcttcggcattcatatacgttgataatgat |
651 |
Q |
| |
|
||||||| ||||||||||||| |||||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
23841661 |
tcgtgatgattttgcacgttacgtggttggatgtttgcttcgggattcacatacgttgataatgat |
23841726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 365 - 446
Target Start/End: Original strand, 23841436 - 23841517
Alignment:
| Q |
365 |
aaaatgttttcataagtatttttgtttctatgtctagtgtttgggtaatgttttgatggttacttttcctttgtactgctat |
446 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| ||||||||| | || |||||||| ||||||| || |||||| |||| |
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|
| T |
23841436 |
aaaatgtcttcagaagtatttttgtttctatgtctggtgtttgggaactgctttgatggctacttttgctctgtactactat |
23841517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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