View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5699-Insertion-3 (Length: 508)
Name: NF5699-Insertion-3
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5699-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0013 (1 HSPs) |
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| [»] scaffold0727 (1 HSPs) |
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| [»] scaffold0718 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 5 - 508
Target Start/End: Original strand, 3584919 - 3585423
Alignment:
| Q |
5 |
acaacatgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaatttta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584919 |
acaacatgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaatttta |
3585018 |
T |
|
| Q |
105 |
aattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagctttgttaatagtagcnnnnnnnnnnnnnnn--gtgatcatatatgacatttg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3585019 |
aattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagctttgttaatagtagcaaaaaaaaaaaaaaaaagtgatcatatatgacatttg |
3585118 |
T |
|
| Q |
203 |
tctaagactcaacaagaatttaaaaattgagtgaaaaataaaaccaatgggttgtctcccattcaatcgatctttaatgtcaagatcttgatagatgaga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585119 |
tctaagactcaacaagaatttaaaaattgagtgaaaaataaaaccaatgggttgtctcccattcaatcgatctttaatgtcaagatcttgatagatga-- |
3585216 |
T |
|
| Q |
303 |
tgtctatgttgttcccttgagcctcttctccacagggtcttattcatgctctcccattatctttaatttggacttcctgaccttggttaatcccaatgcg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3585217 |
tgtctatgttgttcccttgagcctcttctccacagggtcttattcatgctctcccagtatctttaatttggacttcctgaccttggttaatcccaatgcg |
3585316 |
T |
|
| Q |
403 |
tcatcccagatttgatgtaatttcatttgcaaatacgttgttgcatattgaagaccagtgtc-gattttcttgtacttagattgtcgatataacatgttt |
501 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3585317 |
tcatcccagatttgatgtaatttcatttgcaaatacgttgttgcatattgaagaccagtgtcacattttcttgtacttagattgtcgatataacatgttt |
3585416 |
T |
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| Q |
502 |
tgagctt |
508 |
Q |
| |
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||||||| |
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|
| T |
3585417 |
tgagctt |
3585423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 10020475 - 10020333
Alignment:
| Q |
6 |
caacatgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaatt-tta |
104 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||| |
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| T |
10020475 |
caacatgttccatagtcattattctcttgaactttgaaagtatgctagcctcctctgccttggtggtaagaacaattctttgagatgaaaagaattatta |
10020376 |
T |
|
| Q |
105 |
aattttttgaaat----ggaagggttatgaaatgcatgcaaat |
143 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |
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| T |
10020375 |
aattttttgaaatggaaggaagggttataaaatgcatgcaaat |
10020333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 318 - 425
Target Start/End: Complemental strand, 10020319 - 10020212
Alignment:
| Q |
318 |
cttgagcctcttctccacagggtcttattcatgctctcccattatctttaatttggacttcctgaccttggttaatcccaatgcgtcatcccaga-tttg |
416 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | | |||||||||| || ||||||||||||||||||| |||| |
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| T |
10020319 |
cttgagcctcttctccacaggctcttcttcatgctctcccattatctttaatttggattacttgaccttggtcaa-cccaatgcgtcatcccagattttg |
10020221 |
T |
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| Q |
417 |
atgtaattt |
425 |
Q |
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||||||||| |
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| T |
10020220 |
atgtaattt |
10020212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 29599702 - 29599625
Alignment:
| Q |
65 |
ttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaat |
143 |
Q |
| |
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|||||||||||||||| | ||||||| |||| || ||||||||||| ||||||||| | ||||||||| ||||||||| |
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| T |
29599702 |
ttggtggtaagaacaattttttgagacaaaaacaactttaaattttt-gaaatggaaagattatgaaattcatgcaaat |
29599625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 25827699 - 25827748
Alignment:
| Q |
17 |
atagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttgg |
68 |
Q |
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||||||||||||||||||||||||| ||||| | |||| |||||||||||| |
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| T |
25827699 |
atagtcattatgctcttgaactttgtaagtaagttagc--cctctgccttgg |
25827748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 20132322 - 20132233
Alignment:
| Q |
63 |
ccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc |
152 |
Q |
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||||| |||||||||||| ||||||| | |||| |||||||| ||||||||||||||| ||||| ||| ||||| ||||||| |||| |
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| T |
20132322 |
ccttgatggtaagaacaattctttgaaacaaaaacaattttaatttttttgaaatggaaacgttatacaattcatgccaattcaaaaagc |
20132233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 12677139 - 12677240
Alignment:
| Q |
9 |
catgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaatt |
108 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||| |||| |||||| |||||||||||| || ||||||| ||| | ||| |||| |||||||| || |
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| T |
12677139 |
catgccccatagccattatgctctggaactttgtcagtaagctagc--cctctgccttggcagtcagaacaattctctaagacaaaaacaattttaattt |
12677236 |
T |
|
| Q |
109 |
tttt |
112 |
Q |
| |
|
|||| |
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|
| T |
12677237 |
tttt |
12677240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 44702 - 44796
Alignment:
| Q |
57 |
cctctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc |
152 |
Q |
| |
|
|||||||||||||||||| || || ||| ||||| |||| ||||||||| |||| |||||||| |||||| ||| ||||||||||| |||||| |
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| T |
44702 |
cctctgccttggtggtaataataattctctgagacaaaaacaattttaaa-ttttgaaaatggaaatgttatgtaatacatgcaaattcgacaagc |
44796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 25182630 - 25182689
Alignment:
| Q |
93 |
aaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc |
152 |
Q |
| |
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|||| |||||||||||||| ||||||||| | ||||| ||| | |||||||||||||||| |
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|
| T |
25182630 |
aaaacaattttaaatttttggaaatggaaagattatgtaattcctgcaaattcaacaagc |
25182689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 3530 - 3437
Alignment:
| Q |
59 |
tctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc |
152 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| |||| |||||| |||||| |||||||| || |||||||| ||||| |||| ||||||| |
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| T |
3530 |
tctgccttggtggtaacaacaattccttgaggcaaaaataattttttatttttgaaaatggaaaggctatgaaattcatgccaattaaacaagc |
3437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 23551395 - 23551302
Alignment:
| Q |
59 |
tctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc |
152 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| |||| |||||| |||||| |||||||| || |||||||| ||||| |||| ||||||| |
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|
| T |
23551395 |
tctgccttggtggtaacaacaattccttgaggcaaaaataattttttatttttgaaaatggaaaggctatgaaattcatgccaattaaacaagc |
23551302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 9346718 - 9346769
Alignment:
| Q |
107 |
ttttttgaaatggaagggttatgaaatgcatgcaaattcaacaagctttgtta |
159 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
9346718 |
ttttttgaaatggaaaggttatgaaattcatgc-acttcaacaagcattgtta |
9346769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0718 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0718
Description:
Target: scaffold0718; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 1073 - 972
Alignment:
| Q |
9 |
catgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaatt |
108 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| |||||| ||||||| |||| || ||||||| ||| | ||| |||| |||||||| || |
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|
| T |
1073 |
catgccccatagccattatgctcttgaactttgtcagtaagctagc--cctctgcgttggcagtcagaacaattctctaagacaaaaacaattttaattt |
976 |
T |
|
| Q |
109 |
tttt |
112 |
Q |
| |
|
|||| |
|
|
| T |
975 |
tttt |
972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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