View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5699_high_2 (Length: 485)
Name: NF5699_high_2
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5699_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 39304468 - 39304771
Alignment:
| Q |
1 |
agcaataaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304468 |
agcaataaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaag |
39304567 |
T |
|
| Q |
101 |
agacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39304568 |
agacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatga |
39304667 |
T |
|
| Q |
201 |
tattatttgggctattacaacgttaggctttgaagaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304668 |
tattatttgggctattacaacgttaggctttgaagaatatgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaat |
39304767 |
T |
|
| Q |
301 |
gttc |
304 |
Q |
| |
|
|||| |
|
|
| T |
39304768 |
gttc |
39304771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 367 - 468
Target Start/End: Original strand, 39304828 - 39304929
Alignment:
| Q |
367 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaacctccttatatgactactgatcaaccatttccacttc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304828 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaaactccttatatgactactgatcaaccatttccacttc |
39304927 |
T |
|
| Q |
467 |
ct |
468 |
Q |
| |
|
|| |
|
|
| T |
39304928 |
ct |
39304929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 38281618 - 38281774
Alignment:
| Q |
65 |
ttcctgcaaatggaaaaatctcaaaggatgcaaaagagacagttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatg |
164 |
Q |
| |
|
|||| ||||||| ||||||||||| || |||||||| || |||||||||||||| || |||||||| ||||| | || || ||||| || ||||| || |
|
|
| T |
38281618 |
ttccagcaaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtg |
38281717 |
T |
|
| Q |
165 |
tcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaac |
221 |
Q |
| |
|
||| ||||||||||| || ||||| |||||||||||| || |||||||||| ||||| |
|
|
| T |
38281718 |
tcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaac |
38281774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 44105492 - 44105545
Alignment:
| Q |
7 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaag |
61 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
44105492 |
aaagaacaagatcgttttc-tcctatagccaatgtgggtagaatcatgaaaaaag |
44105545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 41866626 - 41866750
Alignment:
| Q |
112 |
gaatgtgtgtcggagttcataagttttgtcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttggg |
211 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||| ||||| || ||||| ||||| ||||| ||| ||||||| ||||| || || ||| | |||||| |
|
|
| T |
41866626 |
gaatgtgtatcggagttcatcagcttcatcaccggtgaagcttccgataagtgtcagagagagaaacgaaagacgatcaacggcgacgatctactttggg |
41866725 |
T |
|
| Q |
212 |
ctattacaacgttaggctttgaaga |
236 |
Q |
| |
|
| || || |||||||| |||||||| |
|
|
| T |
41866726 |
cgatgactacgttaggatttgaaga |
41866750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 155
Target Start/End: Complemental strand, 39786519 - 39786371
Alignment:
| Q |
7 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacag |
106 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||||||||| || |||||| || | | ||| |||||| ||||||||| || ||||| ||||| || |
|
|
| T |
39786519 |
aaagagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaacca |
39786420 |
T |
|
| Q |
107 |
ttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatc |
155 |
Q |
| |
|
| ||||| ||||| || ||||| | |||||||| || || |||||||| |
|
|
| T |
39786419 |
tgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatc |
39786371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University