View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5699_high_4 (Length: 373)
Name: NF5699_high_4
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5699_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 28 - 373
Target Start/End: Original strand, 39304060 - 39304401
Alignment:
| Q |
28 |
gttaattaagtttggtaatttgtcatcaaagggtatttctatttgtattgacaataatagtgttatctaagttggaattggatcgggtcgtggcagttac |
127 |
Q |
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| T |
39304060 |
gttaattaagtttggtaatttgtcatcaaagggtatttctatttgtattgacaataatagtgttatctaagttggaattggatcgggtcgtggcagttac |
39304159 |
T |
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| Q |
128 |
atgaagtactcaacatctagaacgagtccgggggacttgcctannnnnnnnnnnnnaacttttacttctcctaactaacccttcttacttgcctattttt |
227 |
Q |
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| T |
39304160 |
atgaagtactcaacatctagaacgagtccgggggacttgcctatttttctttttttaacttttacttctcctaactaacccttcttacttgcctattttt |
39304259 |
T |
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| Q |
228 |
atgcctcactttcagtttatatatctatacaataatgtaaattttaaatgtaatattgtaaggtcacgtaacatccttcctataagctcattaatttagt |
327 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39304260 |
atgcctcactttcagtttatctatctatacaataatgtaaattttaaatgtaatattgtaaggtcacgtaaca----tcctataagctcattaatttagt |
39304355 |
T |
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| Q |
328 |
tccaatggatgatgagagtcatagtaatttgccaaatggattcaac |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304356 |
tccaatggatgatgagagtcatagtaatttgccaaatggattcaac |
39304401 |
T |
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