View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5699_high_6 (Length: 269)

Name: NF5699_high_6
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5699_high_6
NF5699_high_6
[»] chr7 (2 HSPs)
chr7 (20-242)||(3584704-3584927)
chr7 (161-208)||(23690278-23690325)
[»] chr6 (1 HSPs)
chr6 (161-211)||(2878212-2878262)
[»] chr3 (1 HSPs)
chr3 (161-215)||(20132515-20132569)
[»] chr1 (2 HSPs)
chr1 (179-233)||(10020596-10020650)
chr1 (185-234)||(10034267-10034316)
[»] scaffold0718 (1 HSPs)
scaffold0718 (161-211)||(1210-1260)
[»] chr2 (1 HSPs)
chr2 (185-218)||(27757621-27757654)
[»] scaffold0049 (1 HSPs)
scaffold0049 (163-211)||(40541-40589)
[»] chr8 (1 HSPs)
chr8 (30-98)||(21230097-21230165)
[»] chr4 (1 HSPs)
chr4 (38-98)||(22216029-22216089)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 242
Target Start/End: Complemental strand, 3584927 - 3584704
Alignment:
Q  20 acatgttgcagaagatactcatcataatcaccatttattttctttgtaacataaccggtgagaatttgattcaaatatttcccctttttactatannnnn 119  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  3584927 acatgttgtagaagatactcatcataatcaccatttattttctttgtaacataaccggtgagaatttgattcaaatatttcccctttttactatattttt 3584828  T
Q  120 nn-gcttcatatgtgagtatcattgtttgagcaatactatgtagcttgcattggttctctatagactattggtcatactttcatacacacgagacacatt 218  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3584827 tttgcttcatatgtgagtatcattgtttgagcaatactatgtagcttgcattggttctctatagactattggtcatactttcatacacacgagacacatt 3584728  T
Q  219 ttctggtactctaagcatttccaa 242  Q
    || |||||||||||||||||||||    
T  3584727 ttttggtactctaagcatttccaa 3584704  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 23690325 - 23690278
Alignment:
Q  161 agcttgcattggttctctatagactattggtcatactttcatacacac 208  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  23690325 agcttgcattggttctctacagactattggtcatattttcatacacac 23690278  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 2878212 - 2878262
Alignment:
Q  161 agcttgcattggttctctatagactattggtcatactttcatacacacgag 211  Q
    ||||||||||||||||||| |||||||||||| || |||||||||||||||    
T  2878212 agcttgcattggttctctacagactattggtcgtattttcatacacacgag 2878262  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 20132515 - 20132569
Alignment:
Q  161 agcttgcattggttctctatagactattggtcatactttcatacacacgagacac 215  Q
    ||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||    
T  20132515 agcttgcattggttctctacagactattgatcataatgtcatacacacgagacac 20132569  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 10020596 - 10020650
Alignment:
Q  179 atagactattggtcatactttcatacacacgagacacattttctggtactctaag 233  Q
    |||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||    
T  10020596 atagactattggtcgtactttcttacacacgaggcacatttgctggtactctaag 10020650  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 10034267 - 10034316
Alignment:
Q  185 tattggtcatactttcatacacacgagacacattttctggtactctaagc 234  Q
    |||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  10034267 tattggtcgtactttcttacacacgaggcacattttctggtactctaagc 10034316  T

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Target: scaffold0718 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 1210 - 1260
Alignment:
Q  161 agcttgcattggttctctatagactattggtcatactttcatacacacgag 211  Q
    ||||||||||||||||||| ||||| |||| |||| |||| ||||||||||    
T  1210 agcttgcattggttctctacagactgttggccatattttcgtacacacgag 1260  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 27757654 - 27757621
Alignment:
Q  185 tattggtcatactttcatacacacgagacacatt 218  Q
    ||||||||||| ||||||||||||||||||||||    
T  27757654 tattggtcatattttcatacacacgagacacatt 27757621  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 40589 - 40541
Alignment:
Q  163 cttgcattggttctctatagactattggtcatactttcatacacacgag 211  Q
    |||| |||||||||||| |||||||||| | || |||||||||||||||    
T  40589 cttgaattggttctctacagactattggccgtattttcatacacacgag 40541  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 21230097 - 21230165
Alignment:
Q  30 gaagatactcatcataatcaccatttattttctttgtaacataaccggtgagaatttgattcaaatatt 98  Q
    |||| ||||||||| ||||||||| |||||| | | || ||||||| ||||||||||||  ||||||||    
T  21230097 gaaggtactcatcacaatcaccatatattttttgtatagcataaccagtgagaatttgagacaaatatt 21230165  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 22216029 - 22216089
Alignment:
Q  38 tcatcataatcaccatttattttctttgtaacataaccggtgagaatttgattcaaatatt 98  Q
    |||||| ||||||||| | |||||| | || ||||||||||||||||||||  ||||||||    
T  22216029 tcatcacaatcaccatctcttttctatatagcataaccggtgagaatttgagccaaatatt 22216089  T

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