View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5699_low_1 (Length: 533)
Name: NF5699_low_1
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5699_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 793219 - 792720
Alignment:
| Q |
16 |
atgtaaagtaatatgagaatcaatgatatcactgcaattgattgtgtcacagagatggaacatttggatatggaagagaggtttaagaatgaaaagtaat |
115 |
Q |
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| T |
793219 |
atgtaaagtaatatgagaatcaatgatatcactgcaattgattgtgtcacagagatggaacatttggatatggaagagaggtttaagaatgaaaagtaat |
793120 |
T |
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| Q |
116 |
ttggtagaggacttttcatgatcataagcttgaacttatccaattgaagtttagatttggtatattagttcaaatatgaagaattagcttattgtagtat |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
793119 |
ttggtagaaaacttttcatgatcataagcttgaacttaaccaattgaagtttagatttggtatattagttcaaatatgaagaattagcttattgtagtat |
793020 |
T |
|
| Q |
216 |
ataagtagaaggaagttttaaaatgcaactgttttatccttttctcatgccgtgtgtcattccctttatgtaacagagatttcgcaaaacaaaaaattaa |
315 |
Q |
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| T |
793019 |
ataagtagaaggaagttttaaaatgcaactgttttatccttttctcatgccgtgtgtcattccctttatgtaacagagatttcgcaaaacaaaaaattaa |
792920 |
T |
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| Q |
316 |
aattgcttttacaatcaaaacacttgacttttgattttcccttttcttcccccaaaataaatgcattagtttgggaaatgcaactaatcacgaagtttgt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
792919 |
aattgcttttacaatcaaaacacttgacttttgattttcccttttcttccccctaaataaatgcattattttgggaaatgcaactaatcacgaagtttgt |
792820 |
T |
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| Q |
416 |
gtgtttttaataagcatcatcataaagtttgtgtgaaataaccgtatggacaacttcggttttatgaagagtaatttcaactagtatactcctctaaagt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
792819 |
gtgtttttaataagcatcatcataaagtttgtgtgaaataaccgtatgaacaacttcggttttatgaagagcaatttcaactagtatactcctctaaagt |
792720 |
T |
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