View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5699_low_3 (Length: 388)
Name: NF5699_low_3
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5699_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 18714853 - 18714658
Alignment:
| Q |
33 |
ggaggagctgttaaggaagtgtaggctgttgttaactgatgttactttgcaagttcagctctctgattagtggaggtcaaggcttgaggatagtgatgct |
132 |
Q |
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| T |
18714853 |
ggaggagctgttaaggaagtgtaggctgttgttatctgatgttacttggcaagttcagctctctgatcagtggaggtgaaggcttgaggatagtgatgtt |
18714754 |
T |
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| Q |
133 |
tactctgtgcatagcacttaccatatgctcacatcagatgacagtcaggttgtgaatgcggtatcatatatgatatggcaccgacatttcccagtt |
228 |
Q |
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| T |
18714753 |
tactctgtgcgtagcacttaccatatgctcacatcagatgacagtcaggttgtgaatgtggtatcagatatgatatggcaccgacatgtcccagtt |
18714658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 229 - 376
Target Start/End: Complemental strand, 18712600 - 18712453
Alignment:
| Q |
229 |
tccttgacgaaggcctctttccatcttaaattctttagttgaactgtcattcacaagcactgatgtcattgtcgtagttacaccttctaaaatccactta |
328 |
Q |
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| T |
18712600 |
tccttgacgaaagcctctttccatcttaaattatttagtcgaactgtcattcacaagcactgatgtcattgtcgtagtcacaccttctaaaatccactta |
18712501 |
T |
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| Q |
329 |
ggccacaaagtcggaaaattcatttttaccatcacatcttccaagtat |
376 |
Q |
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| T |
18712500 |
cgtcacaaagtcggaaaattcatttttaccatcacatcttccaagtat |
18712453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 30435320 - 30435124
Alignment:
| Q |
33 |
ggaggagctgttaaggaagtgtaggctgttgttaactgatgttactttgcaagttcagctctctgattagtggaggtcaaggcttgaggatagtgatgct |
132 |
Q |
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||||||||||||| || ||||||||||||||||| ||||| |||||||||| ||||| ||||||||| ||||||||| ||||||||||||| || || |
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| T |
30435320 |
ggaggagctgttaggggagtgtaggctgttgttatctgattttactttgcaggttcaactctctgatcagtggaggtggaggcttgaggataatggtgta |
30435221 |
T |
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| Q |
133 |
tactctgtgcatagcactta----ccatatgctcacatcagatgacagtcaggttgtgaatgcggtatcatatatgatatggcaccgacatttccca |
225 |
Q |
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|||||||||| |||| |||| ||||||||||||| || ||||||||||||||||||| |||||||| ||| ||||||||| |||||| ||||| |
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| T |
30435220 |
tactctgtgcgtagcgcttaccggccatatgctcacaacaaatgacagtcaggttgtgaacacggtatcagatacgatatggcatcgacatgtccca |
30435124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 6892471 - 6892427
Alignment:
| Q |
319 |
aatccacttaggccacaaagtcggaaaattcatttttaccatcac |
363 |
Q |
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| T |
6892471 |
aatccacttacgccaaagagtcggaaaattcattttcaccatcac |
6892427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 17318733 - 17318542
Alignment:
| Q |
33 |
ggaggagctgttaaggaagtgtaggctgttgttaactgatgttactttgcaagttcagctctctgattagtggaggtcaaggcttgaggatagtgatgct |
132 |
Q |
| |
|
|||| |||| ||| || |||||||| |||| || |||||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||| | |||| |
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| T |
17318733 |
ggagaagctattaggggagtgtaggttgttcttgtctgatgttactttgcaggttcaactctctgatcagtggaggtggaggcttgaggatagcggtgct |
17318634 |
T |
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| Q |
133 |
tactctgtgcatagcacttaccatatgctcacatcagatgacagtcaggttgtgaatgcggtatcatatatgatatggcaccgacatttccc |
224 |
Q |
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||||||||| |||| ||||||||||||||||| || ||| |||||| |||||| | || || || ||||||| |||||| ||||| |||| |
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| T |
17318633 |
cactctgtgcgtagcgcttaccatatgctcacaacaaatgtcagtcatgttgtggacgcagtttcggatatgatttggcacagacatgtccc |
17318542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 364
Target Start/End: Complemental strand, 16407239 - 16407104
Alignment:
| Q |
229 |
tccttgacgaaggcctctttccatcttaaattctttagttgaactgtcattcacaagcactgatgtcattgtcgtagttacaccttctaaaatccactta |
328 |
Q |
| |
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|||||||||||||||||||||||| |||||||| | || | ||| |||||||||| | || || | | |||||||||| |||||||||||||||| |
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| T |
16407239 |
tccttgacgaaggcctctttccattttaaattcatctgtcgggctgccattcacaagtattggtgccgacggtgtagttacacattctaaaatccactta |
16407140 |
T |
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| Q |
329 |
ggccacaaagtcggaaaattcatttttaccatcaca |
364 |
Q |
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|||| | ||||| |||||||||||| | ||||||| |
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| T |
16407139 |
cgccatagagtcgtaaaattcattttaatcatcaca |
16407104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 10875961 - 10876013
Alignment:
| Q |
287 |
actgatgtcattgtcgtagttacaccttctaaaatccacttaggccacaaagt |
339 |
Q |
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|||||||||||| ||||| |||||| ||||| |||||||||| |||||||||| |
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| T |
10875961 |
actgatgtcattctcgtaattacacattctataatccacttacgccacaaagt |
10876013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 24286865 - 24286820
Alignment:
| Q |
306 |
ttacaccttctaaaatccacttaggccacaaagtcggaaaattcat |
351 |
Q |
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|||||| |||||||||||||||| ||||||| || ||||||||||| |
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| T |
24286865 |
ttacacattctaaaatccacttatgccacaatgttggaaaattcat |
24286820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 5669185 - 5669229
Alignment:
| Q |
319 |
aatccacttaggccacaaagtcggaaaattcatttttaccatcac |
363 |
Q |
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|||||||||| |||| | |||||||||||||||||| |||||||| |
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| T |
5669185 |
aatccacttacgccaaagagtcggaaaattcattttcaccatcac |
5669229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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