View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5699_low_5 (Length: 336)

Name: NF5699_low_5
Description: NF5699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5699_low_5
NF5699_low_5
[»] chr8 (4 HSPs)
chr8 (1-134)||(19973570-19973703)
chr8 (1-134)||(21019130-21019263)
chr8 (219-323)||(19973377-19973480)
chr8 (219-323)||(21019353-21019456)
[»] chr5 (4 HSPs)
chr5 (262-308)||(24388404-24388450)
chr5 (270-308)||(24273771-24273809)
chr5 (264-308)||(4904816-4904860)
chr5 (264-308)||(7442530-7442574)
[»] chr3 (2 HSPs)
chr3 (245-308)||(25590836-25590899)
chr3 (262-308)||(2032431-2032477)
[»] chr2 (1 HSPs)
chr2 (262-308)||(6150091-6150137)
[»] chr7 (1 HSPs)
chr7 (264-308)||(5216399-5216443)
[»] chr6 (1 HSPs)
chr6 (268-308)||(17714874-17714914)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19973703 - 19973570
Alignment:
Q  1 attgagtgtacgactcacctgataggtgcgacttatcaattcgggctagagctcgtcactgacctcgaacagttaagtcaatcatatatttttagtcaat 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  19973703 attgagtgtacgattcacctgattggtgcgacttatcaattcgcgctagagctcgtcaatgacctcgaacagttaagtcaatcatttatttttagtcaat 19973604  T
Q  101 cacctactctcttttcttattaccatttggagac 134  Q
    ||||||||||||||||||||||||||||||||||    
T  19973603 cacctactctcttttcttattaccatttggagac 19973570  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21019130 - 21019263
Alignment:
Q  1 attgagtgtacgactcacctgataggtgcgacttatcaattcgggctagagctcgtcactgacctcgaacagttaagtcaatcatatatttttagtcaat 100  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  21019130 attgagtgtacgattcacctgattggtgcgacttatcaattcgcgctagagctcgtcaatgacctcgaacagttaagtcaatcatttatttttagtcaat 21019229  T
Q  101 cacctactctcttttcttattaccatttggagac 134  Q
    ||||||||||||||||||||||||||||||||||    
T  21019230 cacctactctcttttcttattaccatttggagac 21019263  T

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Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 19973480 - 19973377
Alignment:
Q  219 attttagtcaaatatattttttgctttgtttggattggaaggaaaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaatcggggtaaa 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  19973480 attttagtcaaatatattttt-gctttgtttggattggaaggaaaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaatgagggtaaa 19973382  T
Q  319 aagtg 323  Q
    |||||    
T  19973381 aagtg 19973377  T

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Target: chr8; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 21019353 - 21019456
Alignment:
Q  219 attttagtcaaatatattttttgctttgtttggattggaaggaaaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaatcggggtaaa 318  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  21019353 attttagtcaaatatatttt-tgctttgtttggattggaaggaaaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaatgagggtaaa 21019451  T
Q  319 aagtg 323  Q
    |||||    
T  21019452 aagtg 21019456  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 24388450 - 24388404
Alignment:
Q  262 aaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||    
T  24388450 aaagtgaaaggaaagaaagtaaaaggaaagattgttgaagaaatgaa 24388404  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 24273771 - 24273809
Alignment:
Q  270 aggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  24273771 aggaaagaaagtaaaaggaaagattgttgaagaaatgaa 24273809  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 4904816 - 4904860
Alignment:
Q  264 agtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||| ||||||||||||||||||||| |||| ||||| ||||||    
T  4904816 agtgagaggaaagaaagtaaaaggaaagattgatgaaggaatgaa 4904860  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 7442574 - 7442530
Alignment:
Q  264 agtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||| ||||||||||||||||||||| |||| ||||| ||||||    
T  7442574 agtgagaggaaagaaagtaaaaggaaagattgatgaaggaatgaa 7442530  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 25590836 - 25590899
Alignment:
Q  245 tgtttggattggaaggaaaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||||||||||||   ||||||  |||||||| |||||||||||| |||||||||| ||||||    
T  25590836 tgtttggattggaaaagaaagtgtgaggaaagatagtaaaaggaaagattgttgaaggaatgaa 25590899  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 2032477 - 2032431
Alignment:
Q  262 aaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||||| |||||||| |||||||||||| |||||||||| ||||||    
T  2032477 aaagtgaaaggaaagatagtaaaaggaaagattgttgaaggaatgaa 2032431  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 6150091 - 6150137
Alignment:
Q  262 aaagtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||||| |||||||| |||||||||||| |||||||||| ||||||    
T  6150091 aaagtgaaaggaaagatagtaaaaggaaagattgttgaaggaatgaa 6150137  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 5216399 - 5216443
Alignment:
Q  264 agtgataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    ||||| ||||||||||||||||||||| |||| ||||| ||||||    
T  5216399 agtgagaggaaagaaagtaaaaggaaagattgatgaaggaatgaa 5216443  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 17714874 - 17714914
Alignment:
Q  268 ataggaaagaaagtaaaaggaaacattgttgaagaaatgaa 308  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17714874 ataggaaagaaagtaataggaaagattgttgaaggaatgaa 17714914  T

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