View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700-Insertion-2 (Length: 1130)
Name: NF5700-Insertion-2
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700-Insertion-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 933; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 933; E-Value: 0
Query Start/End: Original strand, 7 - 1105
Target Start/End: Complemental strand, 30190188 - 30189087
Alignment:
| Q |
7 |
agagacatggattatttttaattgggggacaatggaggatcaaattatgccatcagttcaatatttacacaattttgtacaactaattgtgtaatgcagc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30190188 |
agagacatggattatttttaattgggggacaagggaggatcaaattatgccatcacttcaatatttacacaattttgtataactaattgtgtaatgcagc |
30190089 |
T |
|
| Q |
107 |
tgacatctaagctgattattcgttaaaatataaattataaactgtaaagcaaaaatgaaatgaggcaaagttttattgtttagatatacataaaatacaa |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30190088 |
tgacatctaagctgattattcgtcaaaatataaattataaactgtaaagcaaaaatgaaatgaggtaaagttttattgtttagatatacataaaatacaa |
30189989 |
T |
|
| Q |
207 |
taaatatggacatcagtgacatatctgaaatcagaggtctctcctactttgagcaagatcactagcaatatcttcatgttgttcacattgttccaaaaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189988 |
taaatatggacatcagtgacatatctgaaatcagaggtctctcctagtttgagcaagatcactagcaatatcttcatgttgttcacattgttccaaaaat |
30189889 |
T |
|
| Q |
307 |
ttcttataaccaggattataagcaacaacaagacgcagatactttgcagcttcagccttttgaccagagtcatgtaaagagctgtaaacccaataaatcc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189888 |
ttcttataaccaggattataagcaacaacaagtcgcagatactttgcagcttcagccttttgaccagagtcatgtaaagagctgtaaacccaataaatcc |
30189789 |
T |
|
| Q |
407 |
aatcccatgagcaaaatgaaaataagaaaaggaaagtttgaacactaattaaggtatttaaccaagttgtacctggcaagcagcagcaaaccatcaaaat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30189788 |
aatcccatgagcaaaatgaaaataagaaaaggaaagtttgaacactaattaaggtatttaaccaagttgtacctggcaagcagcagcaaaccatcaaaat |
30189689 |
T |
|
| Q |
507 |
aatagcgtttgctagcgggatcttcaggctcctccatatttgcaactctttcgaagtgtgcacgcgcttcatccttctttccctgccatgcagaaaattg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30189688 |
aatagcgtttgctagcgggatcttcaggctcctccatatttgcaactctttcaaagtgtgcacgcgcttcatccttctttccctgccatgcagaaaattg |
30189589 |
T |
|
| Q |
607 |
aagaaaaatgaaaatgaaatccaatttctaagaaagaactagaagcataatatttgtgaagagacattaacattgttaattgcttattgatacataaatt |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30189588 |
aagaaaaatgaaaatgaaatccaatttctaagaaagaactagaagcataatatttgtgaagagacattaacattgttaattgcttattgatacataaatt |
30189489 |
T |
|
| Q |
707 |
ctatatatgttgttaatatatgatgatcacaattttaatnnnnnnnnttaaattaaattgtgatcataactagtaggcatagttacatatttttctccca |
806 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
30189488 |
ctatatatgtagttaatatatgatgatcacaattttaataaaaaaaattaaattaaattgtgatcaaaactagtaggcatagttacatatctttctccca |
30189389 |
T |
|
| Q |
807 |
cctatatcaaaatatattctttctactataaatgtgtcatnnnnnnnntataatttagagtctttagtagggtaagaaatgttgaatatatatgtatctg |
906 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
30189388 |
cctatatcaaaatatattctttctactataaatgtgtcataaaaaaaatataatttagagtctttagta-ggtaagaaatgttgaatatatatgtatctg |
30189290 |
T |
|
| Q |
907 |
agaagtatcggtggaaatgttttt-aaaagaattattggatactttcaggggatcagacacatcggtattagatacgtgtcagacaccaataacttttca |
1005 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
30189289 |
agaagtatcggtggaaatgtttttaaaaagaattattggatactttcaggggatcagacacatcggtattagatacgtgtcagacaccgat-acttttca |
30189191 |
T |
|
| Q |
1006 |
atttctgtagtacacatcgacttcatggggccaaatagtagggcaataaacc--aaacaagttcca-tttgcaggtggatggt-aactgaaaatcggaat |
1101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||| || |||| | |||||||||||||||| |
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|
| T |
30189190 |
atttctgtagtacacatcgacttcatggggccaaatagtaaggcaataaacccaaaccaagttccattttgccagttgatgttaaactgaaaatcggaat |
30189091 |
T |
|
| Q |
1102 |
acaa |
1105 |
Q |
| |
|
|||| |
|
|
| T |
30189090 |
acaa |
30189087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 785 - 831
Target Start/End: Complemental strand, 28940804 - 28940758
Alignment:
| Q |
785 |
atagttacatatttttctcccacctatatcaaaatatattctttcta |
831 |
Q |
| |
|
|||||| ||||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
28940804 |
atagtttcatatctttcacccacatatatcaaaatatattctttcta |
28940758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 764 - 845
Target Start/End: Complemental strand, 6514749 - 6514668
Alignment:
| Q |
764 |
ttgtgatcataactagtaggcatagttacatatttttctcccacctatatcaaaatatattctttctactataaatgtgtca |
845 |
Q |
| |
|
||||||||||||| | |||||| ||||| |||| ||| | |||| |||||| |||||||||| ||||||| ||||||||| |
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|
| T |
6514749 |
ttgtgatcataacaaataggcaaagttaaatatctttgccacacccatatcagaatatattctctctactacgaatgtgtca |
6514668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 787 - 843
Target Start/End: Complemental strand, 1968406 - 1968350
Alignment:
| Q |
787 |
agttacatatttttctcccacctatatcaaaatatattctttctactataaatgtgt |
843 |
Q |
| |
|
||||| |||| |||| ||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
1968406 |
agttatatatctttcccccacctatatcagaatatattctttctactaaaaatgtgt |
1968350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 785 - 827
Target Start/End: Complemental strand, 18262772 - 18262730
Alignment:
| Q |
785 |
atagttacatatttttctcccacctatatcaaaatatattctt |
827 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
18262772 |
atagttacatatctttctcctacctatatcaaaatatattctt |
18262730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 898 - 935
Target Start/End: Original strand, 2641305 - 2641342
Alignment:
| Q |
898 |
atgtatctgagaagtatcggtggaaatgtttttaaaag |
935 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
2641305 |
atgtatctgagaagtataggtggaaatatttttaaaag |
2641342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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