View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700-Insertion-4 (Length: 711)
Name: NF5700-Insertion-4
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 238 - 707
Target Start/End: Complemental strand, 30266596 - 30266128
Alignment:
| Q |
238 |
tgtattattaatacaaaaaagaggtaactgttttgagagaaaaggtatagaaactgtgtgcatgtgaaggtggatgaacgtgaacgtggttactcactca |
337 |
Q |
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| T |
30266596 |
tgtattattaatacaaaaaagaggtaactgttttgagagaaaaggtatagaaactgtgtgcatgtgaaggtggatgaacgtgaacgtggt----cactca |
30266501 |
T |
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| Q |
338 |
ctcactatgcaactttttcacgcggtttagtaaaatttgaacaatggtggtgatatatggtaggaaaaa-gattt-gtttttcaaataccaaaaatccgg |
435 |
Q |
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| T |
30266500 |
ctcaccatgcaactttttcacgcggtttagtaaaatttgaacaatggtggtgatatatggtaggaaaaaagattttgtttttcaaat-ccaaaaatccgg |
30266402 |
T |
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| Q |
436 |
tgtaagtgatatgattaagggtagaagaacaagatccgatccaaatcaattaaataggttcgattttgttaacgtattctacgccataccattatatttt |
535 |
Q |
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| T |
30266401 |
tgtgagtgatatgattaagggtagaagaacaagatcccatccaaaccaattaaataggttcgattttgttaacgtattctacgccataccattatatttt |
30266302 |
T |
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| Q |
536 |
gatttggatatcgattttatcgtcatgttttatggaggttgtgtagctcaatg--nnnnnnnnnaaggaaagagagaatttatttttgaaaaggtcaaga |
633 |
Q |
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| T |
30266301 |
gatttggatatcgattttatcgtcgtgttttatggatgttgtgtagctcaatgtttttttttttaaggaaagagaaattttatttttgaaaaggtcaaga |
30266202 |
T |
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| Q |
634 |
aagaatgtattaaaatggcatagtcataacacaagaagtgttaatattgaaaatacaatagtaaagattacaaa |
707 |
Q |
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| T |
30266201 |
aagaatgtattaaaatggcatagtcataacacaagaagtgttaatattgaaaatacaatagtaaagattacaaa |
30266128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 30266839 - 30266746
Alignment:
| Q |
7 |
aactttcatcaaaaacccaacttccaacaaacaatgcacaactactttgattattgtttgctttcaaactgggtttttgatgataaacttgttc |
100 |
Q |
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| T |
30266839 |
aactttcatcaaaaacccaacttcctacaaacaatgcacaactactttgattattgtttgctttcaaactgggtttttgatgataaacttgttc |
30266746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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