View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700-Insertion-6 (Length: 682)
Name: NF5700-Insertion-6
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 43591782 - 43592194
Alignment:
| Q |
8 |
caaactccctaggagttgttacatattcatcaaaagcaccaggtccgcttttgaattcagagtcaatagtgtaaactctgtctgtcatattatcaccagc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43591782 |
caaactccctaggagttgttacatattcatcaaaagcaccaggtccgcttttgaattcagagtcaatagtgtaaactctgtctgtcatattatcaccagc |
43591881 |
T |
|
| Q |
108 |
ctcggacaaattatctaccttcttaaaattggagaaatcccctgacccattattattattcctcttcctaaagctaccattgagccttggagaatccgac |
207 |
Q |
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| T |
43591882 |
ctcggacaaattatctaccttcttaaaattggagaaatcccctgacccattattattattcctcttcctaaagctaccattgagccttggagaatccgac |
43591981 |
T |
|
| Q |
208 |
acaaactcagggccaaacgacgacgagtcacatgaaaatttcctcgaatgtttattcgttctaggagaatgtccaactatcaccttctctataacatttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43591982 |
acaaactcagggccaaacgacgacgagtcacatgaaaatttcctcgaatgtttattcgttctaggagaatgtccaactatcaccttctctataacattct |
43592081 |
T |
|
| Q |
308 |
tcccattgaaatccccatccatctgactataagttggggttttctccatttgagatattctattctccaaattcctcaaacgatccctcggagtttcccc |
407 |
Q |
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| T |
43592082 |
tcccattgaaatccccatccatctgactataagttggggttttctccatttgagatattctattctccaaattcctcaaacgatccctcggagtttcccc |
43592181 |
T |
|
| Q |
408 |
aaacacatacttc |
420 |
Q |
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| T |
43592182 |
aaacacatacttc |
43592194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 490 - 682
Target Start/End: Original strand, 43592264 - 43592456
Alignment:
| Q |
490 |
ttcaaaggaggatactcataaggtggaaattcataatcaccaccttctacctctgactcagtcaagccataactcagcattctatgcttataagcctgaa |
589 |
Q |
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| T |
43592264 |
ttcaaaggaggatactcataaggtggaaattcataatcaccaccttctacctctgactcagtcaagccataactcagcattctatgcttataagcctgaa |
43592363 |
T |
|
| Q |
590 |
cttcacacgtaagtgaatgtatcacttgttcccttttatacaacaattcctctaaagctaaaagctcctgttgatcatgacacgtcctctcct |
682 |
Q |
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| T |
43592364 |
cttcacacgtaagtgaatgtatcacttgttcccttttgtacaacaattcctctaaagctaaaagctcctgttgatcatgacacgtcctctcct |
43592456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 24017430 - 24017291
Alignment:
| Q |
271 |
ggagaatgtccaactatcaccttctctataacatttttcccattgaaatccccatccatctgactataagttggggttttctccatttgagatattctat |
370 |
Q |
| |
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||||| |||||||| || || ||||| ||||||||| ||| | ||||| ||||||| ||| || ||||| || ||||||||||||||||| || |||| |
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| T |
24017430 |
ggagattgtccaacaattactttctccgaaacattttttccaataaaatcaccatccacctggctgtaagtgggagttttctccatttgagaaatcctat |
24017331 |
T |
|
| Q |
371 |
tctccaaattcctcaaacgatccctcggagtttccccaaa |
410 |
Q |
| |
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||||||| |||||||||| || |||||||||||||| |
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| T |
24017330 |
tctccaagctcctcaaacggtcatcaggagtttccccaaa |
24017291 |
T |
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