View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700-Insertion-7 (Length: 603)
Name: NF5700-Insertion-7
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 51 - 587
Target Start/End: Original strand, 51564271 - 51564808
Alignment:
| Q |
51 |
gtctattatctccctgtctgaaactttgacgttaccccctctctctgagttttttcatcctctattgtgggagtcagcgttttgattgagctgattgcaa |
150 |
Q |
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| T |
51564271 |
gtctattatctccctgtctgaaactttcacgttaccccctctctctgagttttttcatcctctattgtgggagtcagcgttttgattgagctgattgcaa |
51564370 |
T |
|
| Q |
151 |
tccatccataaccaccatgttcattgtaagctcattcatcatcgattcctaaattaattcaacttattatttttattatttccgggtaatgaaatggcga |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51564371 |
tccatccataaccaccatgttcattgtaagctcattcatcattgattcctaaattaattcaacttattatttttattatttccggttaatgaaatggcga |
51564470 |
T |
|
| Q |
251 |
tgtctgttataggaattagatgctcctgcgagcgtgaggaagcaattggccaaattgtttgtggaagctctcaatgcaactctgcctactcaatctgatg |
350 |
Q |
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| T |
51564471 |
tgtctgttataggaattagatgctcctgcgagcgtgaggaagcaattggccaaattgtttgtggaagctctcaatgcaaccctgcctactcaatctgatg |
51564570 |
T |
|
| Q |
351 |
ctattgtcccattaattgacgcatgtgttgcaaaaaatggtatcaaacctgctgattatcaatggtatgtctcaaaagcagctattcacaaataagc-cc |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
51564571 |
ctattgtcccattaattgacgcatgtgttgcaaaaaatggtatcaaacctgctgattatcaatggtatatctcaaaagcagctattcacaaataagctct |
51564670 |
T |
|
| Q |
450 |
ttaattaagctctttatccaaacacccacttatttgttttttaaattcattcattcattcctggtgcagtaataatgcaatgagtctttttgctaagatt |
549 |
Q |
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| T |
51564671 |
ttaattaagctctttatccaaacacccacttatttgttttttaaattcattcattcattcttggtgcagtaataatgcaatgagtctttttgctaagatt |
51564770 |
T |
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| Q |
550 |
aaagggaagcaacaggagttcacaaatccacgttcact |
587 |
Q |
| |
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| T |
51564771 |
aaagggaagcaacaggagttcataaatccacgttcact |
51564808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 258 - 417
Target Start/End: Complemental strand, 47978889 - 47978733
Alignment:
| Q |
258 |
tataggaattagatgctcctgcgagcgtgaggaagcaattggccaaattgtttgtggaagctctcaatgcaactctgcctactcaatctgatgctattgt |
357 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||| | |||||| ||||||||||| ||| ||| | || ||| || |||||| |||| |
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| T |
47978889 |
tataggaattagatgctcctgcgagtgtcaggaagcaattggctacgttgtttcgggaagctctcattgctactgttcccactgaacctgatg---ttgt |
47978793 |
T |
|
| Q |
358 |
cccattaattgacgcatgtgttgcaaaaaatggtatcaaacctgctgattatcaatggta |
417 |
Q |
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|| |||||||| || |||||| ||||||| ||| | |||| |||||||||||||||||| |
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| T |
47978792 |
tcccttaattgatgcttgtgttccaaaaaacggtgttaaacatgctgattatcaatggta |
47978733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 515 - 591
Target Start/End: Complemental strand, 47978243 - 47978167
Alignment:
| Q |
515 |
gcagtaataatgcaatgagtctttttgctaagattaaagggaagcaacaggagttcacaaatccacgttcactcgga |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| || ||| |||||| ||||| |
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| T |
47978243 |
gcagtaataatgcaatgagtctttttgctaagattaaagggaagcgaccggaattcaaaagtcctcgttcagtcgga |
47978167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 513 - 587
Target Start/End: Original strand, 39711614 - 39711688
Alignment:
| Q |
513 |
gtgcagtaataatgcaatgagtctttttgctaagattaaagggaagcaacaggagttcacaaatccacgttcact |
587 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| | | |||| ||| |||| ||||||||| ||||| |
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| T |
39711614 |
gtgcagtaacaatgcaatgagtctttttgctaagattaaagagcaacaaccggaattcaaaaatccacgctcact |
39711688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 587
Target Start/End: Complemental strand, 42313635 - 42313562
Alignment:
| Q |
514 |
tgcagtaataatgcaatgagtctttttgctaagattaaagggaagcaacaggagttcacaaatccacgttcact |
587 |
Q |
| |
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||||||||||| || |||||||||||| ||| ||||||| |||||||| || ||| ||||||||||||||| |
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| T |
42313635 |
tgcagtaataacgcgatgagtctttttcctattattaaagagaagcaacccgaattccgaaatccacgttcact |
42313562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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