View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700_high_3 (Length: 339)
Name: NF5700_high_3
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 42431482 - 42431794
Alignment:
| Q |
19 |
caaaaatgtttcttaacagaaacagcttgatgtgcaactttcttatcatcagaatcatcgtactcgtccacctcatacgtgcaaaaatcaccctccggca |
118 |
Q |
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| T |
42431482 |
caaaaatgtttcttaacagaaacagcttgatgtgcaactttcttatcatcagaatcatcatactcgtccacctcatacgtgcaaaaatcaccctccggca |
42431581 |
T |
|
| Q |
119 |
aaccctccactgtagcactcaaaatatgcaaaacataacaaccaggtaaaccaggataagaccctgaattcctctcctccactctcatctcatacgaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42431582 |
aaccctccactgtagcactcaaaatatgcaaaacataacaaccaggtaaaccaggataagaccctgaattcctctcctccactctcatctcatacgaatt |
42431681 |
T |
|
| Q |
219 |
cggatcaatcatcacaatatcacaaatctctgtttccccgttaatcacagacccaagctcttccttaatccctctaacagcagcagattccggatcctca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42431682 |
cggatcaatcatcacaatatcacaaatctctgtttccccgttaatcacagacccaagctcttccttaatccctctaacagcagcagattccggatcctca |
42431781 |
T |
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| Q |
319 |
ttcggcttcatct |
331 |
Q |
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||||||||||||| |
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| T |
42431782 |
ttcggcttcatct |
42431794 |
T |
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