View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700_low_2 (Length: 427)
Name: NF5700_low_2
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 3902973 - 3903198
Alignment:
| Q |
10 |
attattcttcaaacaatgaacgcacttaatttaaagaaatgaaatacaacaaaactacaagaattgtctagttggggagaatattaacaaaaatatacct |
109 |
Q |
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| T |
3902973 |
attattcttcaaacaataaacacatttaactaaaagaaatgaaatacaacaaaactacaagaattgtctagttggggagaatattaacaaaaatatacct |
3903072 |
T |
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| Q |
110 |
tattctcatgcttcactgattcattcaggggagaggagtgggatttactaataaaaacaatttggtcagatgtttgatttatttttgtaaaatcaattct |
209 |
Q |
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| T |
3903073 |
tattctcatgcttcactgattcattcaggggagaggagtggaatttactaataaaaacaatttggtcagatgtttgatttatttttgtaaaatcaattct |
3903172 |
T |
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| Q |
210 |
tatttgactttttctaacatagaaga |
235 |
Q |
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| T |
3903173 |
tattttactttttctaacatagaaga |
3903198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 269 - 411
Target Start/End: Original strand, 3903207 - 3903349
Alignment:
| Q |
269 |
tgtttggtcggccctagttttgctgcctcattaattaaaatgtcaagaatgatataaaaatgaatggtatataattgtgaggtgaagtcgtaaaatggaa |
368 |
Q |
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| T |
3903207 |
tgtttggtcggccctagttttattgcctcattaattaaaatgccaagaatgatataaaaatgaatggtatataattgtgagctgaagtcgtaaaatggaa |
3903306 |
T |
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| Q |
369 |
aaacatactaagtttgatatatacaacaagagggagaagcaag |
411 |
Q |
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| T |
3903307 |
acacatactaagtttgatatatacaacaagagggagaagcaag |
3903349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 328
Target Start/End: Original strand, 3894373 - 3894508
Alignment:
| Q |
193 |
tttgtaaaatcaattcttatttgactttttctaacatagaagacct-attttagtattcttgctaggccataaaatatgtttggtcggccctagtttt-g |
290 |
Q |
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| T |
3894373 |
tttgtaaaatcaattcttattt-actttttctaacatagaagacctcattttagtatttgcgttaggccacaaaatatgttgagccggacatagttttcg |
3894471 |
T |
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| Q |
291 |
ctgcctcattaattaaaatgtcaagaatgatataaaaa |
328 |
Q |
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| T |
3894472 |
ct-acttattaatcaaaacgtcaagaatgatataaaaa |
3894508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 3905583 - 3905647
Alignment:
| Q |
42 |
aaagaaatgaaatacaacaaaactacaagaattgtctagttggggagaatattaacaaaaatata |
106 |
Q |
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| T |
3905583 |
aaagaaatgaaatataacaaaactacaataattgactagttgaggagaatattaacaaaattata |
3905647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 3906023 - 3906079
Alignment:
| Q |
312 |
caagaatgatataaaaatgaatggtatataattgtgaggtgaagtcgtaaaatggaa |
368 |
Q |
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| T |
3906023 |
caagaatgatataaaaatgcatagtatataattgtgagccgaagtcgtaaaatggaa |
3906079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 3905793 - 3905840
Alignment:
| Q |
191 |
tttttgtaaaatcaattcttatttgactttttctaacatagaagacct |
238 |
Q |
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| T |
3905793 |
tttttgtaaaatcaattcttaatttactttttctatcatataagacct |
3905840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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