View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5700_low_5 (Length: 247)
Name: NF5700_low_5
Description: NF5700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5700_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 35208962 - 35208734
Alignment:
| Q |
1 |
gaaaggattcaagtatatggtaccaaccttggctagttggcttcgtatcttggcaacaactactcatcatttggagtgtccacatatcactgtttcatat |
100 |
Q |
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| T |
35208962 |
gaaaggattcaagtatatggtaccaaccttggctagttggcttcgtatctt---aacaactactcatcatttggagtgtccacatatcactgtttcagat |
35208866 |
T |
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| Q |
101 |
ttaatggtcacaacttaactcagaagcaatgaaatatagagctaattaatggactctttgaccataacacaacgatagggatatttaatactccatgaca |
200 |
Q |
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| T |
35208865 |
ttaatggtcacaacttaactcagaagcaatgaaatatggagctaattaatggactctttgaccataacacaaccataaggatatttaatactccatgaca |
35208766 |
T |
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| Q |
201 |
tgcctacttggaagattaataaagatggtggt |
232 |
Q |
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| T |
35208765 |
tgcctacttggaagattaataaagatggtggt |
35208734 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 32208398 - 32208447
Alignment:
| Q |
66 |
atcatttggagtgtccacatatcactgtttcatatttaatggtcacaact |
115 |
Q |
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| T |
32208398 |
atcatttggagtggccacatatcaccgttgcagacttaatggtcacaact |
32208447 |
T |
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