View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5701-Insertion-2 (Length: 380)
Name: NF5701-Insertion-2
Description: NF5701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5701-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 17985912 - 17986285
Alignment:
| Q |
8 |
gtttggagatggctagctactatgcttaactgtactatgcaatttcaaactaaagaggatgtttggtctctatgtaataaaggttggaatgcacaatgcc |
107 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17985912 |
gtttggagatggctagctattatgcttaactgtactatgcaatttcaaactaaagaggatgtttggtctctatgtaataaaggttggaatgcacaatgcc |
17986011 |
T |
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| Q |
108 |
aactagtggtgacttctgctttagttaatgtcttctgctcaatggtatgccaagaatcaattaaggttcaataacaaaaagattgattggagaacatctg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17986012 |
aactagtggtgacttctgctttagttaatgtcttctgctcaatggtatgccaagaatcaattaaggttcaataacaaaaagattgattggagaacatctg |
17986111 |
T |
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| Q |
208 |
tctcaaatatattatcttgtgcctccctatcaggtaacttaactggtaagaaagcttcttctgacacgagaaa-tttattgtcttaaagaaatttggtgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
17986112 |
tctcaaatatattatcttgtgcctccctatcaggtaacttaactggcaagaaagcttcttctgacatgagaaattttattgtcttaaagaaatttggtgt |
17986211 |
T |
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| Q |
307 |
cagcttgcatcccccaaatgcccctaaaattattgaggttgtgtggaaccctccaatctttaattggataaaat |
380 |
Q |
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| T |
17986212 |
cagtttgcatcccccaaatgcccctaaaattattgaggttgtgtggaaccctccaatctttaattggataaaat |
17986285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 378
Target Start/End: Complemental strand, 20749729 - 20749355
Alignment:
| Q |
8 |
gtttggagatggctagctactatgcttaactgtactatgcaatttcaaactaaagaggatgtttggtctctatgtaataaaggttggaatgcacaatgcc |
107 |
Q |
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| T |
20749729 |
gtttggagatggctagctactatgcttaattgtactatgcaatttcaatccaaagaggatgtctggtctctatgtaataaaggttggaatgcacaatgcc |
20749630 |
T |
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| Q |
108 |
aactagtggtgacttctgctttagttaatgtcttctgctcaat--ggtatgccaagaa-tcaattaaggttcaataacaaaaagattgattggagaacat |
204 |
Q |
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| T |
20749629 |
aattggtggtgacttctgctctagtgaatgtattctgctcaatttggtatgccaggaaatcaattaaggttcaataacaaaaagattgattggagaacaa |
20749530 |
T |
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| Q |
205 |
ctgtctcaaatatattatcttgtgcctccctatcaggtaacttaactggtaagaaagcttcttctgacacgagaaa-tttattgtcttaaagaaatttgg |
303 |
Q |
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| T |
20749529 |
ctgtctcaaatatattatcttatgcctccctatcaggtaacttaactggtaagaaagcttcttctgacatgagaaacttcattgtcttaaagaagtttgg |
20749430 |
T |
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| Q |
304 |
tgtcagcttgcatcccccaaatgcccctaaaattattgaggttgtgtggaaccctccaatctttaattggataaa |
378 |
Q |
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| T |
20749429 |
tgtcagtttacaccccgcaaatgcccctaaaattattaaggttgtgtggaatcctccaatcttcaattggataaa |
20749355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 8777791 - 8777669
Alignment:
| Q |
238 |
caggtaacttaactggtaagaaagcttcttctgacacgagaaattt-attgtcttaaagaaatttggtgtcagcttgcatcccccaaatgcccctaaaat |
336 |
Q |
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|||||||||||||| | ||||||||| | |||| | |||||| || ||||| |||||||| |||| ||| || | ||||| ||||||||||||||||| |
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| T |
8777791 |
caggtaacttaactagcaagaaagctcatactgatatgagaaacttcattgttttaaagaagtttgatgttagtattcatcctccaaatgcccctaaaat |
8777692 |
T |
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| Q |
337 |
tattgaggttgtgtggaaccctc |
359 |
Q |
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||| || ||||||||||| |||| |
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| T |
8777691 |
tatcgaagttgtgtggaatcctc |
8777669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 23632012 - 23631964
Alignment:
| Q |
332 |
aaaattattgaggttgtgtggaaccctccaatctttaattggataaaat |
380 |
Q |
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||||||||||||||| | ||||| ||||||||||| |||||||| |||| |
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| T |
23632012 |
aaaattattgaggttatttggaatcctccaatcttcaattggatcaaat |
23631964 |
T |
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