View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5702-Insertion-4 (Length: 193)
Name: NF5702-Insertion-4
Description: NF5702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5702-Insertion-4 |
 | |
|
| [»] scaffold0449 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0449 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 4283 - 4097
Alignment:
| Q |
7 |
aaaaatggtatatataaattccctcattactcctattatgatcgactacagctaccacatttctcatttcttctcttccctcaccatggctatcacaacc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4283 |
aaaaatggtatatataaattccctcattactcccattatgatcgactacagctaccacatttctcatttcttctcttccctcaccatggctatcacaacc |
4184 |
T |
|
| Q |
107 |
caaaaggtatgcattcttggcctttctgaggacttgaaagatcacattgagaaaatttcaatatgcattcttggcctttgcatgagt |
193 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4183 |
caaaaggtatgcattcttggcctttctcaggacttgaaagatcacattgagaaaatttcagtatgcattcttggcctttgcatgagt |
4097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University