View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5702_high_1 (Length: 534)
Name: NF5702_high_1
Description: NF5702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5702_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 519
Target Start/End: Complemental strand, 46582310 - 46581808
Alignment:
| Q |
18 |
atgttgtgatgcaccatggtaggatggttgtgtcactgtaaatggaggaggctgttgttgatacactggcattgacgacgatgaagatgatgac-atta- |
115 |
Q |
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| T |
46582310 |
atgttgtgatgcaccatggtaggatggttgtgtcactgtaaacggaggaggctgttgttgatacactggcattgacgacgatgaagatgaagatgatgac |
46582211 |
T |
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| Q |
116 |
attgtgtttccttttacagaaactagaacaagttcttagtagttggttgtttggattggtaggttagattgaatgtaaggaagtagttggagaataagcg |
215 |
Q |
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| T |
46582210 |
attgtgtttccttttacagaaactagaacaagttcttagtagttggttgtttggattggtaggttagattgaatgtaaggaagtagttggataataagca |
46582111 |
T |
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| Q |
216 |
atgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtgtagaagaatgcatgttattattatttggatgc |
315 |
Q |
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| T |
46582110 |
atgcggagttaaacagaattactactggcaccactttaattacttgtaatgaagattgtaggagagtgtaaaagaatgcatgttattattatttggatgc |
46582011 |
T |
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| Q |
316 |
ttggtgagatgttgttatgagacattctcattctgaaattctctttgtaaaggacgacttatattatatagcagatataaagaaatatctgctttgctta |
415 |
Q |
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| T |
46582010 |
ttgatgagatgttgttatgagacattctcattctgaaattctcgttgtaaaggatgacttatattatatagcagatataaagaaatatctgctttgctta |
46581911 |
T |
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| Q |
416 |
tttctttagaaagagaaagggtttaagaattttgtattctttgatannnnnnnnnnaatttctcacatatttacttcaccagaatagaatcactgtcata |
515 |
Q |
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| T |
46581910 |
tttctttagaaagagaaagggtttaagaattttgtattctttgat-ttttttttttaatttctcacatatttacttcactagaatagaatcactgtcata |
46581812 |
T |
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| Q |
516 |
ctat |
519 |
Q |
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| T |
46581811 |
ctat |
46581808 |
T |
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