View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5702_high_7 (Length: 220)
Name: NF5702_high_7
Description: NF5702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5702_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 48175416 - 48175499
Alignment:
| Q |
119 |
aatttgcaatggtgttgatggatttggaatggttgtttccaattccaattagtgtctcttttgcttcaacaatattggctttag |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48175416 |
aatttgcaatggtgttcatggatttggaatggttgtttccaattccaattagtgtctcttttgcttcaacaatattggctttag |
48175499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 48175304 - 48175351
Alignment:
| Q |
60 |
gtccatttacctccaatttctctatataagccaaaatcttgaagcact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48175304 |
gtccatttacctccaatttctctatataagccaaaatcttgaagcact |
48175351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 48175258 - 48175289
Alignment:
| Q |
15 |
taattctcatatgtcatcattcatatacggac |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48175258 |
taattctcatatgtcatcattcatatacggac |
48175289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University