View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5702_low_3 (Length: 411)
Name: NF5702_low_3
Description: NF5702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5702_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 44456455 - 44456075
Alignment:
| Q |
19 |
cctaacttcctattacaattgcattcagtgtcatgatctatatcctataagaaaaaagtagccatcaaaatcgaataaactaaataatatgaaacacaac |
118 |
Q |
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| T |
44456455 |
cctaacttcctattacaattgcattcagtgtcatgatctatatcctaaaagaaaaaagtagccatcaaaatcgaataaactaaataatatgaaacacaac |
44456356 |
T |
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| Q |
119 |
acaaaattctcatctgcactgatcaagtgaacaaatatattaaatgcgtttaaactgcatttagtgaaacatgtatttatcgcaataggttcaaatagtc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
44456355 |
acaaaattctcatctgcactgatcaagtgaacaaatatattaaatgcgtttaaactgcatttagtgaaacatgtatttatcacagtaggttcaaatagtc |
44456256 |
T |
|
| Q |
219 |
aaaaagacaaaataaccacattgatccattaggcctgaaaaatgaaacaaggaaagaacaaaagatgtaactaggtaatttttcatgaacctgatgatag |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44456255 |
aaaaagacaaaataaccacattgatccattaggcctgaaaaatgaaacaaggaaagaacaaaagatgtaactaggtaatttttcatgaacctgataatag |
44456156 |
T |
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| Q |
319 |
caaatatttacctgctcttcttctttcagcatatgttggtagactgaggtttgcaagatatcaatgcagtacacaggttct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44456155 |
caaatatttacctgctcttcttctttcagcatatgttggtagactgaggtttgcaagatatcaatgcagtacacaagttct |
44456075 |
T |
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