View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5702_low_5 (Length: 286)
Name: NF5702_low_5
Description: NF5702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5702_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 32096885 - 32096615
Alignment:
| Q |
1 |
acatcctcttcacagtcccatacctccacaccaaaaaccatgacgaaacctcccctcaaactcatgatgcaggcgttgacccctcctccaagttacgcgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32096885 |
acatcctcttcacagtcccatacctccacaccaaaaaccatgacgaaacctcccctcaaactcatgatgcaggcgttgacccctcctccaagttacgtgg |
32096786 |
T |
|
| Q |
101 |
caagggaacaccgcaagacgagctgagcgccaaccatgtcctcgcggagcgacgaagaagagagaaactcaatgagaggttcattattttaagatcattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32096785 |
caagggaacaccgcaagacgagctgagcgccaaccatgtcctcgcggagcgacgaagaagagagaaactcaatgaaaggttcattattttaagatcattg |
32096686 |
T |
|
| Q |
201 |
gttccattcgtgacaaaaatggacaaggcttctatattaggtgacactattgagtacttgaaacagctaag |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096685 |
gttccattcgtgacaaaaatggacaaggcttctatattaggtgacactattgagtacttgaaacagctaag |
32096615 |
T |
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