View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704-Insertion-2 (Length: 1097)
Name: NF5704-Insertion-2
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 358 - 1063
Target Start/End: Original strand, 521813 - 522520
Alignment:
| Q |
358 |
attcaataagggtatctactagagttctatagaagaatgaacatgtttcgtatattttctacccattggaggaacttgaggtgtcaaagtgagttgcata |
457 |
Q |
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| T |
521813 |
attcaatatgggtatctactagagttcaatagaagaatgaacatgtttcttatattttctacccattggtggaacttgaggtgtcaaagtgagttgcata |
521912 |
T |
|
| Q |
458 |
gattttgttgaagtagatgaattaagcaatggtaacatttgaataaaaatttgtttcatactaataaagaaatataaatgcgtgagttgcataatttttt |
557 |
Q |
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|||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
521913 |
gattttgttgaagtagcttaattaagcaatggtagcatttgaataaaaatttgtttcatactaataaagaaatataaatgcgtgagttgcataatttttt |
522012 |
T |
|
| Q |
558 |
-atcattacagcaaatgtatatgagtttcataagtatgatgtgacattggggtgaccaattgatagaagtgtatgaaactcagagtgagttctttaaaat |
656 |
Q |
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| T |
522013 |
tatcattacagcaaatgtatatgagtttcataagtatgatgtggtattgtggtgaccaattgatagaagtgtatgaaactcagagtgagttctttaaaat |
522112 |
T |
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| Q |
657 |
atgaccattggagatgctctaagtagcgt-----ccttacttgagtatttactagcaaagtatttcacattacctttcatatgttaagtaagcagtggtt |
751 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
522113 |
atgaccattggagatgctctaagtagcgtagcgtctttacttgagtatttactagcaaagtatttcacattacctttcatatgttaagtaagcagtggtt |
522212 |
T |
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| Q |
752 |
tagtttttctgtggcatgtgtttgtagatctatagttggtgcagatgggaaaatcaggctaccatggctcttattgatggaaatttgcaaggtaaacgac |
851 |
Q |
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| T |
522213 |
tagtttttctgtggcatgtgtttgtagatctatagttggtgcagatgggaaaatcaggctaccatggctcttattgatggaaatttgcaaggtaaacatc |
522312 |
T |
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| Q |
852 |
ataaaaatcaaat-acgcttcattgatgacaccaacctttgtactgttagaactttgtcaatgccaaaacaattgactgaagggaaaaatttccactgct |
950 |
Q |
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| T |
522313 |
atagaaatcaaatgttgcttcattgatgacaccaacctttgtactgttagaactttgtcaatgccaaaacaattgactgaagggaaaaatttccactgct |
522412 |
T |
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| Q |
951 |
tgtttctaatgtaataatttttcatcataatcaccactatggcgtcaatttggttcatgtagcaagatcaccacttaatgggataaggcttggattggtg |
1050 |
Q |
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| T |
522413 |
tgtttctaatgtaataatttttcatcataatca-cactatggcgtc-atttgatccatgtagc-agatca-cacttaatgggataaggctttg-ttgttg |
522507 |
T |
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| Q |
1051 |
tttctgttataat |
1063 |
Q |
| |
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||||||||||||| |
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| T |
522508 |
tttctgttataat |
522520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 521467 - 521783
Alignment:
| Q |
7 |
attcctaaggggctatatagtggtgcactccatcaatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttat--cttgtgttgaaaa |
104 |
Q |
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| T |
521467 |
attcctaaggggctatatagtggtgcactccatcaatgtggagaggtaatatagcattcttcaattgtaaaatgaaggatgttatatcttgtgttgaaaa |
521566 |
T |
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| Q |
105 |
aactgagattaaatgctgtttctttgcaacactacaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatatgaagg |
204 |
Q |
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| T |
521567 |
aactgagattaaatgctgtttctttgcaacactacaaatagttcttctaaaatattaattggtgaatgcagggtcatgaaccatttgtttcatatgaagg |
521666 |
T |
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| Q |
205 |
tcttgaacagctgcaccggtttttatttgttctcgggatcactcatgttctgtatagttgtctcgctgttggtttagcaatgagcaaggtcagtcattaa |
304 |
Q |
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| T |
521667 |
tcttgaacagctgcaccggtttttatttgttctcgggatcactcatgttctgtatagttgtctcgctgttggtttagcgatgagcaaggtcagtcattaa |
521766 |
T |
|
| Q |
305 |
aatgtccagtttattat |
321 |
Q |
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||| ||||||||||||| |
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| T |
521767 |
aatttccagtttattat |
521783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 412 - 470
Target Start/End: Original strand, 44129500 - 44129557
Alignment:
| Q |
412 |
ttttctacccattggaggaacttgaggtgtcaaagtgagttgcatagattttgttgaag |
470 |
Q |
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| T |
44129500 |
ttttctaaccattggaggagcttgaggtggcaaagtgagttgcata-attttgttgaag |
44129557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 8826866 - 8826946
Alignment:
| Q |
173 |
cagggtcatgaaccatttgtttcatatgaaggtcttgaacagctgcaccggtttttatttgttctcgggatcactcatgtt |
253 |
Q |
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| T |
8826866 |
cagggtcatgaatcatttgcttcttatgaaagtcttgagcagcttcatcgctttgtgtttgttcttgggatcactcatgtt |
8826946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 416 - 482
Target Start/End: Complemental strand, 30267228 - 30267162
Alignment:
| Q |
416 |
ctacccattggaggaacttgaggtgtcaaagtgagttgcatagattttgttgaagtagatgaattaa |
482 |
Q |
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| T |
30267228 |
ctacccattagaggaacctgagatggcaaagtaggttgcatagattttgttgaagtagtttaattaa |
30267162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 408 - 470
Target Start/End: Original strand, 5033206 - 5033268
Alignment:
| Q |
408 |
tatattttctacccattggaggaacttgaggtgtcaaagtgagttgcatagattttgttgaag |
470 |
Q |
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| T |
5033206 |
tatattttgtactcattggagtaacttgagatgtcaaagtgagttgtatcgattttattgaag |
5033268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 391 - 473
Target Start/End: Original strand, 32977253 - 32977335
Alignment:
| Q |
391 |
agaatgaacatgtttcgtatattttctacccatt-ggaggaacttgaggtgtcaaagtgagttgcatagattttgttgaagtag |
473 |
Q |
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|||||||||||||| | ||| ||||||| ||||| |||||||| ||| | | |||||| | ||||||||||||||||||||||| |
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| T |
32977253 |
agaatgaacatgttccttat-ttttctatccatttggaggaacctgaagcggcaaagttaattgcatagattttgttgaagtag |
32977335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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