View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704-Insertion-3 (Length: 715)
Name: NF5704-Insertion-3
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 222 - 432
Target Start/End: Complemental strand, 29416472 - 29416262
Alignment:
| Q |
222 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
321 |
Q |
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| T |
29416472 |
tcatctgtttcttgtgcatctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtt |
29416373 |
T |
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| Q |
322 |
tactgttctatcattttccaaccaatgtgaagttccattctcatcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctct |
421 |
Q |
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| T |
29416372 |
tactgttctatcattttccaaccaatgtgaagttccattctcatcaaagtatcactaaaggaggcacctaccttagtgtttgttttaatttgccttctct |
29416273 |
T |
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| Q |
422 |
tccaacaaaaa |
432 |
Q |
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| T |
29416272 |
tccaacaaaaa |
29416262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 532 - 715
Target Start/End: Complemental strand, 29416162 - 29415979
Alignment:
| Q |
532 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
631 |
Q |
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| T |
29416162 |
gtgccactgaattaaactatttatgtaatcctcaactttagttacaagggcctaagattggcttggctgcagtcgtgaattcaccaatagcgaatctcag |
29416063 |
T |
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| Q |
632 |
tcatcaatctacaatcctagcggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatt |
715 |
Q |
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| T |
29416062 |
tcatcaatctacaatcctagaggctttgtatacgcaatgtggatctcagaagtttcacacacaattgaatctcggcagttcatt |
29415979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 29416647 - 29416470
Alignment:
| Q |
8 |
caattcataaagaaaaccttcttccttttggcggaaaaagtatttaataggcttttttctgggttgcactttggatcttgagcatcttgtgctaggatgt |
107 |
Q |
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| T |
29416647 |
caattcataaagaaaaccttcttccttttggaggaaaaagtatttaataggcttttttctgggtttcactttggatcttgagcatcttgtgctaggatgt |
29416548 |
T |
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| Q |
108 |
gtttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
185 |
Q |
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| T |
29416547 |
gtttctaactatttgtgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatca |
29416470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 24655736 - 24655971
Alignment:
| Q |
7 |
acaattcataaagaaaaccttcttccttttggcggaaaaagtatttaataggcttt--tttctgggttgcactttggatcttgagcatcttgtgctagga |
104 |
Q |
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| T |
24655736 |
acaattcataaggaaaaccttcttccttttgaaggaaaaagtatttaataggcattgttttttgggtttcactttggatcttgagcatcttgtgctaaga |
24655835 |
T |
|
| Q |
105 |
tgtgtttctaactatttg-----------tgtcattgagcaaggatgtttaattttacgtcattattagattatgttactgaggtagaatcaatgtactg |
193 |
Q |
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| T |
24655836 |
tgtgtttctaactatttggcctacgtttgtgtcattgaactaggatgtttaattttacgtcattattggattatgttactgaggtagaatcaatgtactg |
24655935 |
T |
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| Q |
194 |
atgcagagaatacaatggactgttaatgtcatctgt |
229 |
Q |
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| T |
24655936 |
atgcagagaatacaatggactgttaatgtcatctgt |
24655971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 24655955 - 24656048
Alignment:
| Q |
241 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaagatttgattacagttctgtttttactggtttactgttctatca |
334 |
Q |
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| T |
24655955 |
ctgttaatgtcatctgtctcatgaaagtatcattttctttttataagtgaaggtttgattacagttctgtttttacttgtttactgttctatca |
24656048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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