View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5704-Insertion-5 (Length: 640)
Name: NF5704-Insertion-5
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704-Insertion-5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 640
Target Start/End: Complemental strand, 34047759 - 34047140
Alignment:
| Q |
8 |
cctcctcctagtcatannnnnnnctctatttatttctaatcaagtgtcaaggattgatgatnnnnnnnnnnnnntcctaaaacaatttcatggaatacaa |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
34047759 |
cctcctcctagtcatatttttttctctatttatttctaatcaagtgtcaaggattgataataaaaaaaaaaaaatcctaaaacaatttcatggaatacaa |
34047660 |
T |
|
| Q |
108 |
aagtaaaataagcaaagacaactatcccaaaacatatttagatatgcagtggagaaaggagagacaaaggttccaacatccaagacatctatttgaaacc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34047659 |
aagtaaaataagcaaagacaactatcccaaaacatatttagatatgcagtggagaaaggagagacaaaagttccaacatccaagacatctatttgaaacc |
34047560 |
T |
|
| Q |
208 |
taatgaatgaatg--------gtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcatatattctc |
299 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34047559 |
taatgaatgaatgaatgaacggtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcatatattctc |
34047460 |
T |
|
| Q |
300 |
tcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtgaaagtataggtgctact |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34047459 |
tcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtgaaagtataggtgctact |
34047360 |
T |
|
| Q |
400 |
cttttgttatcaataaatatgaacccttaacttcttttaaatgatccaacagtatattattgaatattattgaaccacacacttcttgttgtgaaatagc |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34047359 |
cttttgttatcaacaaatatgaacccttaacttcttttaaatgatccaacagtatattat----------tgaaccacacacttcttgttgt-------- |
34047278 |
T |
|
| Q |
500 |
caagagtaatttcttaacataaagaatataaaaaacctattgtgaaatttttgggtaagtgaatgaattaaatcaaaaccgtaaaagaggagtgctaatc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34047277 |
---gagtaatttcttaacataaagaatataaaaaacctattgtgaaatttttgggtaagtgaatgaattaaatcaaaaccgtaaaagaggagtgctaatc |
34047181 |
T |
|
| Q |
600 |
atagccaagagtaatataccaatcaaaaagataaaaattga |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34047180 |
atagccaagagtaatataccaatcaaaaagataaaaattga |
34047140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 130 - 293
Target Start/End: Original strand, 38644772 - 38644933
Alignment:
| Q |
130 |
tatcccaaaacatatttagatatgcagtggagaaaggagagacaaaggttccaacatccaagacatctatttgaaacctaatgaatgaatggtcttgtcc |
229 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| |||| ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
38644772 |
tatcccaaaacatattttgatatgcagcggagagaggaaagacaaaagttccaacatccaagacatct--ttgtaacctaatgaatgaatggtcttgtcc |
38644869 |
T |
|
| Q |
230 |
atgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcatat |
293 |
Q |
| |
|
||| ||||||||||||||||||| |||| |||| |||||||||| | |||| |||||||||||| |
|
|
| T |
38644870 |
atgccatgaatgtaattgttttccatagttttctttgcacaaaattggcttccaagattcatat |
38644933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 38648312 - 38648355
Alignment:
| Q |
373 |
gggttgagtgaaagtataggtgctactcttttgttatcaataaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38648312 |
gggttgagtgaaagtataggtgctactcttttgttatcaataaa |
38648355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 112 - 291
Target Start/End: Complemental strand, 39196698 - 39196517
Alignment:
| Q |
112 |
aaaataagcaaagacaactatcccaaaacatatttagatatgcag---tggagaaaggagagacaaaggttccaacatccaagacatctatttgaaacct |
208 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||| ||||||||| |||||| |||| || ||| ||||||||||| ||| |||||| || ||||| |
|
|
| T |
39196698 |
aaaaaaagcaaagataactatcccaaaacagattttgatatgcagcattggagagaggaaagccaagtgttccaacatc-aagtcatctacttctaacct |
39196600 |
T |
|
| Q |
209 |
aatgaatgaatggtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaagattcat |
291 |
Q |
| |
|
||||||||||||||| | |||| |||||| |||||||||||||| |||| |||||||||||||||| ||||| |||| ||||| |
|
|
| T |
39196599 |
aatgaatgaatggtcctctccacgtcatggatgtaattgttttccatagttttccttgcacaaaaaccgcttccaaggttcat |
39196517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 39196493 - 39196347
Alignment:
| Q |
292 |
atattctctcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtg----aaagt |
387 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
39196493 |
atattctctcccaaacaaaatcgatgaacctgcaagtgaac----atggaaggttttgttgtgaaaacgaaaagagcaaa--ggttgagtgggacaaagt |
39196400 |
T |
|
| Q |
388 |
ataggtgctactcttttgttatcaataaatatgaacccttaacttcttttaaa |
440 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||| | || ||||||| |
|
|
| T |
39196399 |
ataggtgttactcttttattatcaataaatctgaacccttcatttgttttaaa |
39196347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 292 - 427
Target Start/End: Complemental strand, 21921815 - 21921682
Alignment:
| Q |
292 |
atattctctcccaaacaacatccataaacctgcaagtgaacgaacatggaaggttttgttgtgaaaacaaaaagagcatatgggttgagtg----aaagt |
387 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| ||||| |
|
|
| T |
21921815 |
atattctctcccaaacaacatcgatgaacctgcaagtgaac----atggaaggttttgttgtgaaaacgaaaagagcaaa--ggttgagtgggacaaagt |
21921722 |
T |
|
| Q |
388 |
ataggtgctactcttttgttatcaataaatatgaaccctt |
427 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
21921721 |
ataggtgttactcttttattatcaataaatttgaaccctt |
21921682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 90 - 291
Target Start/End: Complemental strand, 21922027 - 21921839
Alignment:
| Q |
90 |
caatttcatggaatacaaaagtaaaataagcaaagacaactatcccaaaacatatttagatatgcag---tggagaaaggagagacaaaggttccaacat |
186 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||| ||||||||||||||| |||| ||||||||| |||||| ||| ||||||| |||||||||| |
|
|
| T |
21922027 |
caatttcatggaatataaaaataaaaaaagcaaagataactatcccaaaacagattttgatatgcagcagtggagagaggtaagacaaatgttccaacat |
21921928 |
T |
|
| Q |
187 |
ccaagacatctatttgaaacctaatgaatgaatggtcttgtccatgtcatgaatgtaattgttttctatagctttccttgcacaaaaatcgctttcaaga |
286 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||||||||||||| |||| |||||||||||| ||| ||||| |||| |
|
|
| T |
21921927 |
t----------------aacctaatgaatgaatggtcctctccatgtcatggatgtaattgttttccatagttttccttgcacataaaccgcttccaagg |
21921844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University