View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704-Insertion-6 (Length: 635)
Name: NF5704-Insertion-6
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 7 - 635
Target Start/End: Complemental strand, 28269920 - 28269296
Alignment:
| Q |
7 |
atctcggccattgatttgaaatcggacgatttagattactcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattggtaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28269920 |
atctcggccattgatttgaaatcggacgatttagattactcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattagtaa |
28269821 |
T |
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| Q |
107 |
ctgtgtgccataattattgtagggaatctgtttcggatgcgaagccagtttattagatgaccttaaatgtttctgttctcctatgttttttgcattaaat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28269820 |
ctgtgtgccataattattgtagggaatctgtttcggatgcgaagccagtttattagatgaccttaaatgtttctgctctcctatgttttttgcattaaat |
28269721 |
T |
|
| Q |
207 |
tctcgtaaaacttatgcaaattgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28269720 |
tctcgtaaaacttatgcaaattgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaacc |
28269621 |
T |
|
| Q |
307 |
ggtaattgacttgtactattttgttaaggaacctaaatattattaagtaattcacgttgtgctgttactagtttaactagatttgacattccacaactcg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28269620 |
ggtaattgacttgtactattttgttaaggaacctaaatattattaagtaattcacgttgtgctattactagtttaactagatttgacattccacaactcg |
28269521 |
T |
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| Q |
407 |
caggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccaca |
506 |
Q |
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| T |
28269520 |
caggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccaca |
28269421 |
T |
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| Q |
507 |
taattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaaaatcaaagtgtttgtatatgcaatcacattttcttctgcagaattaaga |
606 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28269420 |
taattgtatcagcacctacatcaaaagagttggtgaagaaattggaggtaaaatcaaag----tgtatatgcaatcacattttcttctgcagaattaaga |
28269325 |
T |
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| Q |
607 |
aacaaattatttatagttattatgtttga |
635 |
Q |
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| T |
28269324 |
aacaaattatttatagttattatgtttga |
28269296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 408 - 557
Target Start/End: Original strand, 79255 - 79404
Alignment:
| Q |
408 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
507 |
Q |
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|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
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| T |
79255 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
79354 |
T |
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| Q |
508 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
557 |
Q |
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| T |
79355 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
79404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 79078 - 79159
Alignment:
| Q |
231 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
312 |
Q |
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| T |
79078 |
atgcagggggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
79159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 408 - 557
Target Start/End: Complemental strand, 40887029 - 40886880
Alignment:
| Q |
408 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
507 |
Q |
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|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
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| T |
40887029 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
40886930 |
T |
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| Q |
508 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
557 |
Q |
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| T |
40886929 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
40886880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 40887206 - 40887125
Alignment:
| Q |
231 |
atgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaat |
312 |
Q |
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| T |
40887206 |
atgcagggggatatggaactctggaggaacttcttgaagtcataacatgggctcaacttggaattcatgacaagccggtaat |
40887125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 40461782 - 40461699
Alignment:
| Q |
228 |
tgcatgcaggtggttatgggactctagaggagcttcttgaagtcataacctgggctcaacttgggattcacgacaaaccggtaa |
311 |
Q |
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|||||| |||||| |||||||| || |||||||| ||||| || ||||| |||||||||||||| || || || |||||||||| |
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| T |
40461782 |
tgcatgaaggtgggtatgggacacttgaggagctccttgaggtgataacatgggctcaacttggcatccatgataaaccggtaa |
40461699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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