View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5704_high_10 (Length: 372)
Name: NF5704_high_10
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 37078654 - 37079002
Alignment:
| Q |
17 |
tgtttattatccaattatgttttgttgcattgcatgctttgttattggcccatagctttgttttgtttctcattgattgaaaataggctcagtccactct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37078654 |
tgtttattatccaattatgttttgttgcattgcatgctttgttattggcccatagctttgttttgtttctcattgattgaaaataggctcagtccactct |
37078753 |
T |
|
| Q |
117 |
ctttacagaataccttcaaatatgattttaggaagtgttaataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37078754 |
ctttacagaataccttcaaatatgattttaggaagtgttaataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaa |
37078853 |
T |
|
| Q |
217 |
ctttacctttcatgtatttcatattcaaggtttttagctatagtgatgagggtttagagagtgcactgcacattgtgttctgtttcatgttgagaaaaag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37078854 |
ctttacctttcatgtatttcatattcaaggttgttagctatagtgatgagggtttagagagtgcactgcacattttgttctgtttcatgttgagaaaaag |
37078953 |
T |
|
| Q |
317 |
aaaaacacttaggatgcgtttgtttcatggatactaaacatattcttgg |
365 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
37078954 |
aaaaacacttaggatgcatttgtttcatggatactaaacatattcttgg |
37079002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 37064584 - 37064754
Alignment:
| Q |
73 |
tttgttttgtttctcattgattgaaaataggctcagtccactctctttacagaataccttcaaatatgat-------tttaggaagtgttaataaatgat |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| | || |||||||| ||||| ||||| || | |||| |||||||||||| |
|
|
| T |
37064584 |
tttgttttgtttctcattgattgaaaataggctcattccaccat--ttccagaatacattcaattatgaaatgggaattgataaagttttaataaatgat |
37064681 |
T |
|
| Q |
166 |
ttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcat |
238 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||| ||||| | ||| || |||||| ||||||||||| |
|
|
| T |
37064682 |
ttaacatggtgcttgcctaactcaattttcaatacttcgtttaattatctacccaaccttttatgtatttcat |
37064754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 314
Target Start/End: Original strand, 37068830 - 37068980
Alignment:
| Q |
154 |
ttaataaatgatttaacatggtgcttgccaaacacaatattcaatacttggtttattgatcaactttacctttcatgtatttcatattcaaggtttttag |
253 |
Q |
| |
|
||||||||||||| |||||||| | | | ||||| |||||||||||||| || | |||||||| | |||||||||||||||| | ||||| |||| |
|
|
| T |
37068830 |
ttaataaatgattgaacatggtacctac-aaacaaaatattcaatacttaattcaatgatcaacccgaactttcatgtatttcatttg--aggttgttag |
37068926 |
T |
|
| Q |
254 |
ctatagtgatgagggtttagagagtgcactgcacattgtgttctgtttcatgttgagaaaa |
314 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| | ||||||||||| ||||||| |
|
|
| T |
37068927 |
ctatagtgatgaggatttagag-------tgcacattgtttactgtttcatgtcgagaaaa |
37068980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 37064508 - 37064543
Alignment:
| Q |
35 |
gttttgttgcattgcatgctttgttattggcccata |
70 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37064508 |
gttttgttgcactgcatgctttgttattggcccata |
37064543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University