View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5704_high_11 (Length: 355)
Name: NF5704_high_11
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 337
Target Start/End: Original strand, 521162 - 521472
Alignment:
| Q |
29 |
ccagtgtcaacattcaataataatatgcttaccttaattcagttttctatcagaatctttggcaacttcattgnnnnnnnnn--attatttatatttaat |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
521162 |
ccagtgtgaacattcaataataatatgcttaccttatttcagttttctatcagaatctttggcaacttcattgtttttttttttattatatatatttaat |
521261 |
T |
|
| Q |
127 |
taacttgaactgatccttgttgatagagctgatgctgcttgggcttatctctttgttgttggcacaaagcgcgagatggatctctgaaatttgtgtaaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
521262 |
taacttgaactgatccttgttgatagagctgatgctgcttgggcttatctctttgttgttggcacaaagcgcgagatggatctctgaaatttgtgtaaat |
521361 |
T |
|
| Q |
227 |
tcatcacttttcagcagtcgattctatacctgctctgaacaagaccttcccatgattgagcatgtcatgattgtaaactcttcatctttctctgatgaaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
521362 |
tcatcacttttcagcagtcgattctatacctgctctgaacaagaccttcccatgattgagcatgtcatgattgtaaactcttcatctttctctgatgaaa |
521461 |
T |
|
| Q |
327 |
ctactattcct |
337 |
Q |
| |
|
||||||||||| |
|
|
| T |
521462 |
ctactattcct |
521472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University