View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_high_17 (Length: 251)
Name: NF5704_high_17
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 24418469 - 24418241
Alignment:
| Q |
10 |
attatacttaaacaaagttgatagggaagatcatttacatgcagcattctcatattttgataaagatggaagtggatacatcacaaaagatgagcttcaa |
109 |
Q |
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| T |
24418469 |
attacacttaaacaaagttgatagggaagatcatttacatgcagcattctcatattttgataaagatggaagtggatacatcacaaaagatgagcttcaa |
24418370 |
T |
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| Q |
110 |
aaagcttgcgaagaatttggctttagagatgtccccttggaggaaatgatccgagaagttgatcagaataatgtgagtacattttattttatttttgttt |
209 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24418369 |
aaagcttgtgaagaatttggctttagagatgtccccttggaggaaatgatccgagaagttgatcagaataatgtgagtacattttattttatttttgttt |
24418270 |
T |
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| Q |
210 |
cccacatgttccatctacgagaactaagt |
238 |
Q |
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| T |
24418269 |
ctcacatgttcaatctacgagaactaagt |
24418241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 18402496 - 18402602
Alignment:
| Q |
35 |
gaagatcatttacatgcagcattctcatattttgataaagatggaagtggatacatcacaaaagatgagcttcaaaaagcttgcgaagaatttggcttta |
134 |
Q |
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||||||||| || |||||| || || || |||||||||||||||||||| || || || |||| || |||||| |||||||||| || |||||| ||| |
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| T |
18402496 |
gaagatcatctatttgcagccttttcttactttgataaagatggaagtggctatattactcaagaagaacttcaacaagcttgcgatgagtttggcatta |
18402595 |
T |
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| Q |
135 |
gagatgt |
141 |
Q |
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|||||| |
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| T |
18402596 |
aagatgt |
18402602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 43455684 - 43455858
Alignment:
| Q |
17 |
ttaaacaaagttgatagggaagatcatttacatgcagcattctcatattttgataaagatggaagtggatacatcacaaaagatgagcttcaaaaagctt |
116 |
Q |
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|||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||| ||| |||||||| |||| ||||||||| ||| || |
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| T |
43455684 |
ttaaacaaagttgacaaagaagatcatttagttgcagctttctcatattttgataaagatggaaatggctacatcactcaagacgagcttcaacaagttt |
43455783 |
T |
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| Q |
117 |
gcgaagaatttggctttagagatgtccccttggaggaaatgatccgagaagttgatcagaataatgtgagtacat |
191 |
Q |
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| T |
43455784 |
gtaaagaatttggtatgaaggatgtccactttgaggaaatgatccgagaagctgatcaaaataatgtgagtacat |
43455858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 43463892 - 43464020
Alignment:
| Q |
52 |
agcattctcatattttgataaagatggaagtggatacatcacaaaagatgagcttcaaaaagcttgcgaagaatttggctttagagatgtccccttggag |
151 |
Q |
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||||||||| ||||| ||| || |||||| ||| |||||||| |||| ||||||||| ||| ||| |||| ||||| | | |||||||| ||| || |
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| T |
43463892 |
agcattctcttatttcgatcaatatggaaatggctacatcactcaagacgagcttcaacaagtttgtaaagagcttggcatgaaagatgtccactttaag |
43463991 |
T |
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| Q |
152 |
gaaatgatccgagaagttgatcagaataa |
180 |
Q |
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||||||||| |||||| | |||| ||||| |
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| T |
43463992 |
gaaatgatcggagaagcttatcaaaataa |
43464020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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