View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_high_18 (Length: 248)
Name: NF5704_high_18
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 24418005 - 24418234
Alignment:
| Q |
18 |
aactcattcactactgtcgtaaattttgcttacattaacatactggtagtgcttccctaaatccaatgctaaaactactgctaccctttcgacccctttt |
117 |
Q |
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| T |
24418005 |
aactcattcactactgtcgtaaatttttcttacattaacatactggtagtgcctccctaaatccaatgctaaaactactgctaccttttcgacccctctt |
24418104 |
T |
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| Q |
118 |
acccatttctgcattccctctatgcatcatagccacaaattcattgtaatctattcttccatcctgaaaagcaaaaacatacagcataacaaagttatta |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
24418105 |
acccatttctgcattccctctatgcatcatagcaacaaattcattgtaatctattcttccatcctgaaaagcaaaaacatacaccataccaaagtcatta |
24418204 |
T |
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| Q |
218 |
tcaagcttaaaacgtactttgaacggactt |
247 |
Q |
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|||||||||||||||||||||||| ||||| |
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| T |
24418205 |
tcaagcttaaaacgtactttgaacagactt |
24418234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 43456172 - 43456111
Alignment:
| Q |
125 |
tctgcattccctctatgcatcatagccacaaattcattgtaatctattcttccatcctgaaa |
186 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
43456172 |
tctgcattgcctctctgcatcatagccacaaattcattgtagtctatttgtccatcctgaaa |
43456111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 43464392 - 43464331
Alignment:
| Q |
125 |
tctgcattccctctatgcatcatagccacaaattcattgtaatctattcttccatcctgaaa |
186 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
43464392 |
tctgcattgcctctctgcatcatagccacaaattcattgtagtctatttgtccatcctgaaa |
43464331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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