View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_high_4 (Length: 474)
Name: NF5704_high_4
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 28114416 - 28114015
Alignment:
| Q |
18 |
tcaatcctgacgcacgagatcaagctgacaaggctgattgtgagagacgagaagatcgggaccgttcaatgcttcatgggatacctgttttgatcaaaga |
117 |
Q |
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| T |
28114416 |
tcaatcctgactcacgagatcaagctgacaaggctgattgtgagagacgagaagatcgtgaccgttcaatgcttcatgggatacctgttttgatcaaaga |
28114317 |
T |
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| Q |
118 |
cagtattgccacttttgataaactaaatacaacagcaggttcttatgcattgttgggatcgaaggttccacgtgatgcgcacgtggtttcgaagctaagg |
217 |
Q |
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| T |
28114316 |
cagtattgccacttttgataaactaaatacaacagcaggttcttatgcattgttgggatcgaaggttccacgtgatgcgcacgtggtttcgaagctaagg |
28114217 |
T |
|
| Q |
218 |
gatgctggtgctatcattctggggaaaactagtcttccagagtggtatgggattcgttcttcaaaaatgctaggacaagcttggtgccctagaggtggat |
317 |
Q |
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| T |
28114216 |
gatgctggtgctatcattctggggaaaactagtcttccagagtggtatgggattcgttcttcaaaaatgctaggacaagcttggtgccctagaggtggat |
28114117 |
T |
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| Q |
318 |
ttggcttggttagtagtactcatcactatcactctctcttactatgtttctaaatattgttgttatttttagttatattgaatgagcaatagatggattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28114116 |
ttggcttggttagtagtactcatcactatcactctctcttactatgtttctaaatattgttgttatttttagttatattgaatgaggaatagatggattg |
28114017 |
T |
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| Q |
418 |
tt |
419 |
Q |
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|| |
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| T |
28114016 |
tt |
28114015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 28129951 - 28129618
Alignment:
| Q |
18 |
tcaatcctgacgcacgagatcaagctgacaaggctgattgtgagagacgagaagatcgggaccgttcaatgcttcatgggatacctgttttgatcaaaga |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
28129951 |
tcaatcctgacgcacgagatcaagcggacaaggctgattgcgagagacaagaagatcgtgaccgttcgttgcttcatgggatacctgttttgatcaaaga |
28129852 |
T |
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| Q |
118 |
cagtattgccacttttgataaactaaatacaacagcaggttcttatgcattgttgggatcgaaggttccacgtgatgcgcacgtggtttcgaagctaagg |
217 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
28129851 |
cagtattgcaacttttgacaaactaaatacaacagcaggttcttatgcattgcttggatcaaaggttccacgtgatgcacacgtggtttcgaagctaagg |
28129752 |
T |
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| Q |
218 |
gatgctggtgctatcattctggggaaaactagtcttccagagtggtatgggattcgttcttcaaaaatgctaggacaagcttggtgccctagaggtggat |
317 |
Q |
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||||||||||| || |||||||||||||||||||| |||||||||||||| ||||||| | | |||| | || |||||||| |||||||||||| |
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| T |
28129751 |
gatgctggtgccattattctggggaaaactagtctcccagagtggtatggcgctcgttctaccaccatgc---caaaaacttggtgcgctagaggtggat |
28129655 |
T |
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| Q |
318 |
ttggcttggttagtagtactcatcactatcactctctctta |
358 |
Q |
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||| ||||| |||||||||||||| ||||||||||||| |
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| T |
28129654 |
ttgcattggt---tagtactcatcact-tcactctctctta |
28129618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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