View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_12 (Length: 341)
Name: NF5704_low_12
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_12 |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 29417643 - 29417322
Alignment:
| Q |
11 |
caaaggatcattcttattatgataatacctccctcctcctacaccaaacattttgtccttcttatggctgtcatccttacgaagaaacatttgagttgta |
110 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29417643 |
caaaggatcattcttattatgataatacctctctcctcctacaccaaacattttgtccttcttatggctgtcatcctttcgaagaaacatttgagttgta |
29417544 |
T |
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| Q |
111 |
ttctgtttccggtttgaggtttgagaataaggtcaaattagattggccgaatatcaaaatagcgccggcatatctgggtcaagccaaatatgattctggt |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
29417543 |
ttctgtttccggttcgaggtttgagaataaggtcaaattagattggccgaatatcaaaatagcgccggcatatctaggtcaagccagatatgattctggt |
29417444 |
T |
|
| Q |
211 |
tttaggcttttagattcaggtagtgtccatggaactctttatctggtttgtgcacccaacaggaattttatattatggaatccatctactaaggaatcta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29417443 |
tttaggcttttagattcaggtagtgtccatggaactctttatctggtttgtgcacccaacaggaattttatattatggaatccatctactaaggaatcta |
29417344 |
T |
|
| Q |
311 |
aacttattcctcctagcccttt |
332 |
Q |
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|||||||||||||||||||||| |
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| T |
29417343 |
aacttattcctcctagcccttt |
29417322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 83 - 332
Target Start/End: Original strand, 24654801 - 24655053
Alignment:
| Q |
83 |
atccttacgaagaaacatttgagttgtattctgtttccggtttgaggtttgagaataaggtcaaattagattggccgaatatcaaaatagcgccggcata |
182 |
Q |
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||||| |||| || |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||| || ||||| ||| |
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| T |
24654801 |
atcctcacgatgatacatttgagttgtattctgtttccggttcgagttttgaaaataaggtcaaattagattggccaaatatcaaattaaagccgggata |
24654900 |
T |
|
| Q |
183 |
tct---gggtcaagccaaatatgattctggttttaggcttttagattcaggtagtgtccatggaactctttatctggtttgtgcacccaacaggaatttt |
279 |
Q |
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| || | || ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
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| T |
24654901 |
ttatagggctggagtcaaatatgagcgtggttttaggcttttaggttcaggtagtgtccatggaactctttatatggtttgtgcacacaacgggaatttt |
24655000 |
T |
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| Q |
280 |
atattatggaatccatctactaaggaatctaaacttattcctcctagcccttt |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24655001 |
atattatggaatccatctactaaggaatctaaacttattcctcctagcccttt |
24655053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 16487549 - 16487231
Alignment:
| Q |
11 |
caaaggatcattcttattatgataatacctccctcctcctacaccaaacattttgtccttcttatggctgtcatccttacgaagaaacatttgagttgta |
110 |
Q |
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|||||||||||||||||||| || |||| || | || ||||| |||||||||| ||||| | | || | | ||| |||| ||||||||||| ||||| |
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| T |
16487549 |
caaaggatcattcttattatcatgatacgtcttttctactacatcaaacattttctccttttgagggttattatc---acgatgaaacatttgatttgta |
16487453 |
T |
|
| Q |
111 |
ttctgtttccggtttgaggtttgagaataaggtcaaattagattggccgaatatcaaaatagcgccggcatatctgggtcaagccaaatatgattctggt |
210 |
Q |
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|||| || | ||| |||||||||||||| | |||||||||||||||| | | ||||| ||| || ||||| || |||| | | |||||||||||| |
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| T |
16487452 |
ttctcttgctggtaagaggtttgagaataggatcaaattagattggccaagtgtcaaattagatcctatatatcgggatcaaacggagtatgattctggt |
16487353 |
T |
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| Q |
211 |
tttaggcttttagattcaggtagtgtccatggaactctttatctggtttgtgcacccaacaggaattttatattatggaatccatctactaaggaatcta |
310 |
Q |
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|||| | |||| || || || || | ||||||||| | |||| |||||||| || | |||| || |||| |||||||||||||||| ||||| || |
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| T |
16487352 |
tttaatatattaggatctggcagcgttcttggaactctgtgtctgttttgtgcatcccatgtgaatattttattgtggaatccatctactatggaattta |
16487253 |
T |
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| Q |
311 |
aacttattcctcctagcccttt |
332 |
Q |
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| | |||||||| |||||||| |
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| T |
16487252 |
agcacattcctcccagcccttt |
16487231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 24654714 - 24654761
Alignment:
| Q |
11 |
caaaggatcattcttattatgataatacctccctcctcctacaccaaa |
58 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
24654714 |
caaaggatcattcttattatgatgatacctctctcctcctacaccaaa |
24654761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 42777308 - 42777374
Alignment:
| Q |
92 |
aagaaacatttgagttgtattctgtttccggtttgaggtttgagaataaggtcaaattagattggcc |
158 |
Q |
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|||||| ||||||||| ||||||||||| ||| |||||||| |||| || ||||||||||||||| |
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| T |
42777308 |
aagaaagatttgagttatattctgtttctggtgagaggtttggaaatagggccaaattagattggcc |
42777374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 17017 - 16972
Alignment:
| Q |
109 |
tattctgtttccggtttgaggtttgagaataaggtcaaattagatt |
154 |
Q |
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|||||| |||| ||| ||||||||||||||||||||||||||||| |
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| T |
17017 |
tattctctttctggtgagaggtttgagaataaggtcaaattagatt |
16972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 48742687 - 48742658
Alignment:
| Q |
129 |
gtttgagaataaggtcaaattagattggcc |
158 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
48742687 |
gtttgagaataaggtcaaattagattggcc |
48742658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 34287769 - 34287822
Alignment:
| Q |
105 |
gttgtattctgtttccggtttgaggtttgagaataaggtcaaattagattggcc |
158 |
Q |
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|||||||||| |||| || ||||||||| ||||||||||||||||||||||| |
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| T |
34287769 |
gttgtattctctttctagtgagaggtttgataataaggtcaaattagattggcc |
34287822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 17868 - 17836
Alignment:
| Q |
126 |
gaggtttgagaataaggtcaaattagattggcc |
158 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
17868 |
gaggtttgagaataaggtcaaattaaattggcc |
17836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 34264 - 34232
Alignment:
| Q |
126 |
gaggtttgagaataaggtcaaattagattggcc |
158 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
34264 |
gaggtttgagaataaggtcaaatttgattggcc |
34232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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