View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5704_low_14 (Length: 271)

Name: NF5704_low_14
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5704_low_14
NF5704_low_14
[»] chr7 (4 HSPs)
chr7 (103-250)||(30907839-30907986)
chr7 (21-57)||(5924201-5924237)
chr7 (21-57)||(9355305-9355341)
chr7 (21-57)||(36072558-36072594)
[»] chr2 (2 HSPs)
chr2 (188-250)||(17334144-17334206)
chr2 (22-54)||(15161915-15161947)
[»] chr5 (3 HSPs)
chr5 (23-57)||(30774735-30774769)
chr5 (20-57)||(33347217-33347254)
chr5 (21-57)||(639504-639540)
[»] chr1 (2 HSPs)
chr1 (20-58)||(40094652-40094690)
chr1 (189-249)||(26227491-26227551)
[»] chr4 (1 HSPs)
chr4 (21-57)||(31786358-31786394)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 103 - 250
Target Start/End: Complemental strand, 30907986 - 30907839
Alignment:
Q  103 ccctttgttatttacttgtttattttttaatatgaattcttccgatgtaaatttagtgcatactaatttaatacaccttgaatccaaaactcatataaat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30907986 ccctttgttatttacttgtttattttttaatatgaattcttccgatgtaaatttagtgcatactaatttaatacaccttgaatccaaaactcgtataaat 30907887  T
Q  203 tgcacgtctgtttgattacaacgagaatgaatttattgttctgaaaat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30907886 tgcacgtctgtttgattacaacgagaatgaatttattgttctgaaaat 30907839  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 5924201 - 5924237
Alignment:
Q  21 tattttttacaaacgcggatatgaggatggatactat 57  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  5924201 tattttttacaaacgcggatatggggatgggtactat 5924237  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 9355305 - 9355341
Alignment:
Q  21 tattttttacaaacgcggatatgaggatggatactat 57  Q
    ||||||||||||||| || ||||||||||||||||||    
T  9355305 tattttttacaaacgtgggtatgaggatggatactat 9355341  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 36072594 - 36072558
Alignment:
Q  21 tattttttacaaacgcggatatgaggatggatactat 57  Q
    |||||||||||||||||| |||| |||||||||||||    
T  36072594 tattttttacaaacgcgggtatggggatggatactat 36072558  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 17334206 - 17334144
Alignment:
Q  188 aaaactcatataaattgcacgtctgtttgattacaacgagaatgaatttattgttctgaaaat 250  Q
    |||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||||||    
T  17334206 aaaactcatataaattgcacgtctgtttaattataatgagaatgaaattgttgttctgaaaat 17334144  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 15161947 - 15161915
Alignment:
Q  22 attttttacaaacgcggatatgaggatggatac 54  Q
    |||||||||||||||||||||| ||||||||||    
T  15161947 attttttacaaacgcggatatggggatggatac 15161915  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 30774769 - 30774735
Alignment:
Q  23 ttttttacaaacgcggatatgaggatggatactat 57  Q
    ||||||||||||||||||||| |||||||||||||    
T  30774769 ttttttacaaacgcggatatggggatggatactat 30774735  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 33347217 - 33347254
Alignment:
Q  20 atattttttacaaacgcggatatgaggatggatactat 57  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  33347217 atattttttacaaacgcggatatggggatgggtactat 33347254  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 639504 - 639540
Alignment:
Q  21 tattttttacaaacgcggatatgaggatggatactat 57  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  639504 tattttttacaaacgcggatataaggatgggtactat 639540  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 40094652 - 40094690
Alignment:
Q  20 atattttttacaaacgcggatatgaggatggatactatg 58  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  40094652 atattttttacaaacgcgggtatggggatggatactatg 40094690  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 26227551 - 26227491
Alignment:
Q  189 aaactcatataaattgcacgtctgtttgattacaacgagaatgaatttattgttctgaaaa 249  Q
    |||||||||||||||||| | | |||| ||||||||||||| ||| || ||||| ||||||    
T  26227551 aaactcatataaattgcatgcccgtttaattacaacgagaacgaaattgttgttgtgaaaa 26227491  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 31786394 - 31786358
Alignment:
Q  21 tattttttacaaacgcggatatgaggatggatactat 57  Q
    |||||||||||||||||| |||||||||| |||||||    
T  31786394 tattttttacaaacgcgggtatgaggatgaatactat 31786358  T

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