View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_15 (Length: 263)
Name: NF5704_low_15
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_15 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 34765513 - 34765261
Alignment:
| Q |
11 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
110 |
Q |
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| T |
34765513 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
34765414 |
T |
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| Q |
111 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccaca |
210 |
Q |
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| T |
34765413 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccaca |
34765314 |
T |
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| Q |
211 |
atgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttca |
263 |
Q |
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| T |
34765313 |
atgagttcattgtcacattcctcgttccaacacttgatcctctcactctttca |
34765261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 44015464 - 44015301
Alignment:
| Q |
11 |
ttattctcaacaataatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatcca |
110 |
Q |
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| T |
44015464 |
ttattctcaacaataat-ttattaacaggctcaataccaaaatctgttagaaatctacagaagctaactcttttggatttgagttataatagcttatctg |
44015366 |
T |
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| Q |
111 |
gttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaat |
175 |
Q |
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| T |
44015365 |
gtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttgagctcaaat |
44015301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 6440469 - 6440548
Alignment:
| Q |
184 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttca |
263 |
Q |
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|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||| |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttca |
6440548 |
T |
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