View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_16 (Length: 255)
Name: NF5704_low_16
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 43503696 - 43503466
Alignment:
| Q |
9 |
gagatgaagtcactgcgctatctagatgcgcactttaatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctga |
108 |
Q |
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| T |
43503696 |
gagatgaagtcactgcgctatctagatgcgcactttaatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctga |
43503597 |
T |
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| Q |
109 |
gtagtaacttcagcgatcttcaagaaataccagagacatttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcc |
208 |
Q |
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| T |
43503596 |
gtagtaacttcagcgatcttcaagaaataccagagacatttggtgatttgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcc |
43503497 |
T |
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| Q |
209 |
tgatacatttggccgccttgatagtttaatc |
239 |
Q |
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| T |
43503496 |
tgatacatttggccgccttgatagtttaatc |
43503466 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 34564544 - 34564358
Alignment:
| Q |
45 |
aatgaactacatgggcttcctattgcaatcgggaaattgactagtcttgaatttctaaacctgagtagtaacttcagcgatcttcaagaaataccagaga |
144 |
Q |
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| T |
34564544 |
aatgagctacatgggcttccagcagcatttgggagactgactactctggaaattctcaacttgagcagtaatttcgctgatcttaaagaacttccagaga |
34564445 |
T |
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| Q |
145 |
catttggtgatctgagtagcctcaaggaattggatcttagcaacaatcaaattcatgcacttcctgatacatttggccgccttgata |
231 |
Q |
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| T |
34564444 |
catttggcgaattgactaatctcaaggaattggatgtcagtaataatcagattcatgcacttccagatacatttggttgccttgata |
34564358 |
T |
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