View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5704_low_2 (Length: 739)

Name: NF5704_low_2
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5704_low_2
NF5704_low_2
[»] chr4 (13 HSPs)
chr4 (209-728)||(18924596-18925115)
chr4 (26-217)||(18924221-18924412)
chr4 (27-136)||(22180201-22180315)
chr4 (22-113)||(21098062-21098153)
chr4 (26-112)||(25573240-25573326)
chr4 (26-108)||(30779445-30779526)
chr4 (26-113)||(50562693-50562781)
chr4 (45-113)||(9551586-9551653)
chr4 (29-113)||(24687280-24687364)
chr4 (45-113)||(48076935-48077003)
chr4 (26-132)||(4169362-4169473)
chr4 (26-79)||(27765223-27765275)
chr4 (48-113)||(34986896-34986961)
[»] chr7 (16 HSPs)
chr7 (487-728)||(4631661-4631902)
chr7 (505-705)||(4667686-4667880)
chr7 (23-117)||(27334690-27334784)
chr7 (23-113)||(39006849-39006939)
chr7 (26-111)||(46024994-46025079)
chr7 (27-117)||(32091489-32091580)
chr7 (22-106)||(30430704-30430788)
chr7 (22-113)||(5758240-5758331)
chr7 (29-113)||(46345867-46345951)
chr7 (22-113)||(33798664-33798754)
chr7 (94-132)||(31365472-31365510)
chr7 (26-113)||(16932537-16932624)
chr7 (26-113)||(16937920-16938007)
chr7 (335-432)||(4631966-4632059)
chr7 (48-113)||(45402203-45402268)
chr7 (94-136)||(48306354-48306398)
[»] chr1 (5 HSPs)
chr1 (22-113)||(45890523-45890614)
chr1 (22-113)||(23319038-23319129)
chr1 (22-113)||(18057739-18057830)
chr1 (26-136)||(30803147-30803258)
chr1 (22-112)||(37643060-37643151)
[»] chr5 (7 HSPs)
chr5 (22-113)||(13363724-13363815)
chr5 (23-114)||(23334732-23334823)
chr5 (32-113)||(16667681-16667762)
chr5 (49-113)||(7183870-7183934)
chr5 (26-113)||(23948517-23948602)
chr5 (93-136)||(34330187-34330230)
chr5 (22-98)||(18464391-18464468)
[»] chr8 (7 HSPs)
chr8 (22-137)||(15259849-15259969)
chr8 (26-136)||(39022934-39023048)
chr8 (33-135)||(7614763-7614865)
chr8 (22-91)||(35448477-35448546)
chr8 (29-108)||(24472983-24473062)
chr8 (22-108)||(45409508-45409593)
chr8 (47-113)||(1672726-1672792)
[»] scaffold0194 (1 HSPs)
scaffold0194 (26-136)||(28609-28724)
[»] chr6 (5 HSPs)
chr6 (26-117)||(29163652-29163742)
chr6 (26-108)||(25119208-25119290)
chr6 (54-112)||(4101989-4102047)
chr6 (26-108)||(10588701-10588782)
chr6 (48-113)||(32557127-32557192)
[»] chr3 (10 HSPs)
chr3 (26-136)||(16276664-16276778)
chr3 (26-136)||(8719071-8719186)
chr3 (26-136)||(9070958-9071073)
chr3 (22-113)||(23700033-23700123)
chr3 (22-113)||(23718488-23718578)
chr3 (22-113)||(23736944-23737034)
chr3 (22-100)||(47729112-47729190)
chr3 (26-113)||(23756231-23756318)
chr3 (26-108)||(51681216-51681300)
chr3 (94-139)||(19384373-19384423)
[»] chr2 (6 HSPs)
chr2 (49-112)||(4280697-4280760)
chr2 (22-103)||(20710712-20710793)
chr2 (58-113)||(36635778-36635833)
chr2 (50-117)||(25996047-25996114)
chr2 (48-113)||(24023976-24024041)
chr2 (48-113)||(43823831-43823896)
[»] scaffold0009 (1 HSPs)
scaffold0009 (22-112)||(202936-203026)
[»] scaffold0097 (1 HSPs)
scaffold0097 (22-103)||(14551-14632)
[»] scaffold0074 (1 HSPs)
scaffold0074 (58-113)||(35786-35841)
[»] scaffold0012 (1 HSPs)
scaffold0012 (48-113)||(119870-119935)


Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 209 - 728
Target Start/End: Original strand, 18924596 - 18925115
Alignment:
Q  209 ataatcaaatatacannnnnnnccacctataagtttgaacacaaaacaatacctcnnnnnnnnngtttgaacccaaaacattttgactttgaaaacatta 308  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||    
T  18924596 ataatcaaatatacatttttttccacctataagtttgaacacaaaacaataccttaaaaaaaaagtttgaacccaaaacattttgactttgaaaacatta 18924695  T
Q  309 ttttccccgccgaatatacgttccaactcaataaatacaacttccgtggcatggcaaaattcagcaacaaaaattctttagaatggccaaatacctaaag 408  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18924696 ttttccccgtccaatatacgttccaactcaataaatacaacttccgtggcatggcaaaattcagcaacaaaaattctttagaatggccaactacctaaag 18924795  T
Q  409 aacatagttcttactaaaatcaccatgatatatatggttttgtttcagcaactattgttccctctagtggttcactcttatgataatttagccctgaatt 508  Q
    |||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18924796 aacatagttcttactaaaatcaccttgttgtatacggttttgtttcagcaactattgttccctctagtggttaactcttatgataatttagccctgaatt 18924895  T
Q  509 gtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacattgatgactccaaactattctctatcattgaaccacagactgaattttc 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18924896 gtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacatggatgacaccaaactattctctatcattgaaccacagactgaattttc 18924995  T
Q  609 atctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttccaacttcacattctcatttcct 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924996 atctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttccaacttcacattctcatttcct 18925095  T
Q  709 tccgtcgctaatggccctat 728  Q
    |||||||||||| |||||||    
T  18925096 tccgtcgctaatagccctat 18925115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 18924221 - 18924412
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaattatgcacca 125  Q
    ||||||||||||||||||||||||||||||| || |||||||||| | |||||| |||||| |||| ||||||||||||||||||||| |||||||||||    
T  18924221 ttgtttcgtttagtttcgcttgggggtgtaggaaacaattatgttggactaccggttaatgggctggaatttatgcacggtgcataaggattatgcacca 18924320  T
Q  126 taaccgctccccaattcagggtaccatagtttaggnnnnnnnnggttatcagtttccaggtttcttctcctaatgataattatataatcaaa 217  Q
    |||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924321 taaccgctccccaattcagggtaccatagtttaggttttttttggttatcagtttccaggtttcttctcctaatgataattatataatcaaa 18924412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 22180315 - 22180201
Alignment:
Q  27 tgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----ttatgc 121  Q
    |||||||||| ||||||||| ||||||||| || |||||||||| | ||||||||||||| ||||  |||||||||||||||||||| |     ||||||    
T  22180315 tgtttcgtttggtttcgcttaggggtgtaggaaacaattatgttggcctaccgattaatgggctgggatttatgcacggtgcataaggatttccttatgc 22180216  T
Q  122 accataaccgctccc 136  Q
    |||||||||||||||    
T  22180215 accataaccgctccc 22180201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 21098062 - 21098153
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||||| |||| ||||||||||||||||||  ||||||||||||| |||||||  |||||| ||||  ||||||||| ||||||||||    
T  21098062 agtgttgttttgtttggtttcgcttgggggtgtatgaagcaattatgttgggctaccagttaatgggctgtgatttatgcatggtgcataag 21098153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 25573326 - 25573240
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataa 112  Q
    |||||| |||| ||||||||||||||||||  ||||||||||||| |||||||| |||||| ||||  ||||||||| |||||||||    
T  25573326 ttgttttgtttggtttcgcttgggggtgtacgaagcaattatgttgggctaccggttaatgggctgggatttatgcagggtgcataa 25573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 30779526 - 30779445
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgc 108  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||| |||||| ||||  ||||||||| |||||    
T  30779526 ttgtttcgtttggtttcgcttgggggtgtggaa-gcaattatgttgggctaccggttaatgggctgggatttatgcagggtgc 30779445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 50562781 - 50562693
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtaga-aagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||  ||||||| |||||| ||||  ||||||||||| ||||||||    
T  50562781 ttgtttcgtttggtttcacttgggggtgtagggaagcaattatgttgagctaccggttaatgggctgggatttatgcacgatgcataag 50562693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 9551653 - 9551586
Alignment:
Q  45 ttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||  | ||||||| ||||||||||    
T  9551653 ttgggggtgtaggaagcaattatgttgggctaccagttaatgagctg-gacttatgcagggtgcataag 9551586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 24687280 - 24687364
Alignment:
Q  29 tttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||| |||||  || ||||||||| ||||||||||| | |||||||| |||||| ||||| | ||||||| | ||||||||    
T  24687280 tttcgtttggtttcctttaggggtgtaggaagcaattatgatgggctaccggttaatgggctgagacttatgcatgatgcataag 24687364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 48077003 - 48076935
Alignment:
Q  45 ttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||| |||||| || |||||||||| | |||||| |||||| ||||  ||||||||||||||||||||    
T  48077003 ttgggcgtgtaggaatcaattatgttggactaccggttaatgggctgggatttatgcacggtgcataag 48076935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 4169362 - 4169473
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaatt-----atg 120  Q
    ||||||||||| ||||||||| ||||||||| || ||||||| ||   |||||| |||||  ||||  ||||||| || |||||||||||||     |||    
T  4169362 ttgtttcgtttggtttcgcttaggggtgtaggaaacaattatattgaactaccggttaataggctgtgatttatgtacagtgcataagaatttccttatg 4169461  T
Q  121 caccataaccgc 132  Q
    ||||||||||||    
T  4169462 caccataaccgc 4169473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 27765223 - 27765275
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccg 79  Q
    |||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||    
T  27765223 ttgttttgtttggtttcgcttgggg-tgtaggaagcaattatgttgggctaccg 27765275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 34986896 - 34986961
Alignment:
Q  48 ggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||  ||||||||||||| |||||||| |||||| ||||   |||||||| ||||||||||    
T  34986896 ggggtgtacgaagcaattatgttgggctaccggttaatgggctgtgttttatgcagggtgcataag 34986961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 6e-36; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 487 - 728
Target Start/End: Complemental strand, 4631902 - 4631661
Alignment:
Q  487 tatgataatttagccctgaattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacattgatgactccaaactattctctatca 586  Q
    ||||||| ||||||  ||||||||||||||| ||  ||||| |  |||||||||||||| |||||||| ||||  ||| || ||||| ||||||||||||    
T  4631902 tatgatattttagcagtgaattgtggccacttcaacgatactatctttgaaaatcgaacatgggttggggacagggataacaccaaattattctctatca 4631803  T
Q  587 ttgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttc 686  Q
    |||||||||| || ||| |  | ||| ||||| ||||| | || |||||||||||| ||||||| | |||||| || ||||| ||||||||||| |||||    
T  4631802 ttgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttc 4631703  T
Q  687 caacttcacattctcatttccttccgtcgctaatggccctat 728  Q
     || ||||||||||| ||| ||||| || | |||||||||||    
T  4631702 gaatttcacattctccttttcttccatcaccaatggccctat 4631661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 505 - 705
Target Start/End: Complemental strand, 4667880 - 4667686
Alignment:
Q  505 aattgtggccactccatagatacaacatttgaaaatcgaacctgggttggtgacattgatgactccaaactattctctatcattgaaccacagactgaat 604  Q
    |||||||| || ||||||||||| |  ||||||||||||||||||||||| |||| ||||||  ||||||| |||||| |||||||||||||     |||    
T  4667880 aattgtggtcattccatagatactatctttgaaaatcgaacctgggttggggacaatgatgataccaaactcttctctgtcattgaaccaca-----aat 4667786  T
Q  605 tttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgcctcagcacgtatttcattttccaacttcacattctcatt 704  Q
      | |||| | ||| ||||| | || |||||||||||||||||||| || ||||| ||| |||| |||||||| ||||||||| | ||||||||||||||    
T  4667785 cat-atctgtaaaagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcacgtatatcattttccgatttcacattctcatt 4667687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 27334784 - 27334690
Alignment:
Q  23 gtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaatt 117  Q
    |||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||  | ||||||| ||||||||||||||    
T  27334784 gtgttgtttcgtttggtttcgcttgggggtgtacgaagcaattatgttgggctaccgattaatgggctgggacttatgcagggtgcataagaatt 27334690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 39006939 - 39006849
Alignment:
Q  23 gtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||  || |||||| ||||||||||    
T  39006939 gtgttgtttcgtttggtttcgcttgggggtgtacaaagcaattatgttaggctatcggttaatgagctgggatctatgcagggtgcataag 39006849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 46024994 - 46025079
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcata 111  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||| |   ||||||||||||||||||    
T  46024994 ttgtttcgtttggtttcgcttgggggtgtaggaagcaattatgttgggctaccggttaatgagttaggatttatgcacggtgcata 46025079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 32091489 - 32091580
Alignment:
Q  27 tgtttcgtttagtttcgcttgggggtgta-gaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaatt 117  Q
    ||||||||||  ||||||||||||||||| |||| |||||||||||| ||||||||||||  || || ||||||||||||||||| ||||||    
T  32091489 tgtttcgtttgatttcgcttgggggtgtaagaaaacaattatgttagactaccgattaattggcggagatttatgcacggtgcatgagaatt 32091580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 30430704 - 30430788
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggt 106  Q
    ||||||||||| |||  |||||||||||  ||||| ||||||||||||| ||||||| ||||||||  |||||||||||||||||    
T  30430704 agtgttgtttcatttgatttcgcttgggcatgtaggaagcaattatgttgggctaccaattaatgaattgaaatttatgcacggt 30430788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 5758240 - 5758331
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgta-gaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| ||||||||| |||||||| | ||||||||||||| ||||| || |||||| ||||  |||||| |||| ||||||||    
T  5758240 agtgttgtttcgtttggtttcgcttcggggtgtagggaagcaattatgttgggcta-cggttaatgggctgggatttatccacgatgcataag 5758331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 46345951 - 46345867
Alignment:
Q  29 tttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||| |||||  ||| |||||||| ||||||||||||| |||||||| ||||| |||||| | |||||||  |||||||||    
T  46345951 tttcgtttggtttcctttgagggtgtaggaagcaattatgttgggctaccggttaataagctgagacttatgcagcgtgcataag 46345867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 33798664 - 33798754
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||||| ||||| || |||||| |||   ||||| | ||||||||||||    
T  33798664 agtgttgtttcgtttggtttcgcttgagg-tgtaggaagcaattatgttgggctatcggttaatgggcttggatttacgtacggtgcataag 33798754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 31365472 - 31365510
Alignment:
Q  94 atttatgcacggtgcataagaattatgcaccataaccgc 132  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  31365472 atttatgcagggtgcataagaattatgcaccataaccgc 31365510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 16932537 - 16932624
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||| |||||  || | ||||||| ||||||||||||| |||||||| |||||| | ||| | |||||||  |||||||||    
T  16932537 ttgtttcgtttggtttcctttagtggtgtaggaagcaattatgttgggctaccggttaatgggttgagacttatgcagagtgcataag 16932624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 16937920 - 16938007
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||| |||||  || | ||||||| ||||||||||||| |||||||| |||||| | ||| | |||||||  |||||||||    
T  16937920 ttgtttcgtttggtttcctttagtggtgtaggaagcaattatgttgggctaccggttaatgggttgagacttatgcagagtgcataag 16938007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 432
Target Start/End: Complemental strand, 4632059 - 4631966
Alignment:
Q  335 ctcaataaatacaacttccgtggcatggcaaaattcagcaacaaaaattctttaga-atggccaaatacctaaagaacatagttcttactaaaatcacc 432  Q
    |||||||||| |||||||  | |||||||||| ||||   |||||||||||||||  ||||||||   ||||||||||||||||| || ||||||||||    
T  4632059 ctcaataaatgcaacttc--ttgcatggcaaacttca---acaaaaattctttagctatggccaacctcctaaagaacatagttcctagtaaaatcacc 4631966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 45402268 - 45402203
Alignment:
Q  48 ggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||  ||||||||||||| |||||||| |||||| | ||  ||||||||| ||||||||||    
T  45402268 ggggtgtacgaagcaattatgttgggctaccggttaatgggttgggatttatgcagggtgcataag 45402203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 48306354 - 48306398
Alignment:
Q  94 atttatgcacggtgcataagaa--ttatgcaccataaccgctccc 136  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  48306354 atttatgcacggtgcataagaaccttatgcaccataaccgatccc 48306398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 45890523 - 45890614
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||    
T  45890523 agtgttgtttcgtttggtttcgcttgggagtgtagaaagcaattatgttgggctaccggttaatgggctggaatttatgcacggtgcataag 45890614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 23319129 - 23319038
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||| |||||| ||||| |||||||||| |||||||||    
T  23319129 agtgttgtttcgttttgtttcgtttgggggtgtaggaagcaattatgttgggctaccggttaatgggctgagatttatgcacagtgcataag 23319038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 18057739 - 18057830
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||| ||| ||||||||||||||||||| |||||| |||||| |  ||| | |||||  ||||  ||||||||||||||||||||    
T  18057739 agtgttgtttcatttggtttcgcttgggggtgtaggaagcaaatatgttggattactggttaataggctgggatttatgcacggtgcataag 18057830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 30803147 - 30803258
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctacc-gattaatgagctgaaatttatgcacggtgcataagaattatgcacc 124  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||| | ||||| | |||||| |||   ||||||| ||||||||||    |||||||||    
T  30803147 ttgtttcgtttgggttcgcttgggggtgtaggaagcaaatatgttggactaccggtttaatgggcttggatttatgtacggtgcatattccttatgcacc 30803246  T
Q  125 ataaccgctccc 136  Q
    ||||||||||||    
T  30803247 ataaccgctccc 30803258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 37643060 - 37643151
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgta-gaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataa 112  Q
    ||||||||||||||| |||||||||||| | ||| | ||||||||||||| ||||| |  |||||||||||  || ||||||||||||||||    
T  37643060 agtgttgtttcgtttggtttcgcttgggagggtaaggaagcaattatgttgggctatcagttaatgagctgggatgtatgcacggtgcataa 37643151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 13363724 - 13363815
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||| |||||||| ||||||  |||  ||||||||||||||||||||    
T  13363724 agtgttgtttcgttttgtttcgcttgggggtgtaggaaacaattatgttgggctaccggttaatggactgggatttatgcacggtgcataag 13363815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 23334823 - 23334732
Alignment:
Q  23 gtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataaga 114  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||| | |||||| |||||| ||||  |||||||||||||||||||||    
T  23334823 gtgttgtttcgtttggtttcgcttgggggtgtaggaagaaattatgttggactaccggttaatgggctgggatttatgcacggtgcataaga 23334732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 16667762 - 16667681
Alignment:
Q  32 cgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||| |||||  |||||||||||| ||||||||||||| |||||||| |||||| ||||  ||||||||||||||||||||    
T  16667762 cgtttggtttcctttgggggtgtaggaagcaattatgttgggctaccggttaatgggctgggatttatgcacggtgcataag 16667681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 7183870 - 7183934
Alignment:
Q  49 gggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||  |||||||||||||||||||||  |||||| ||||| ||||||||| ||||||||||    
T  7183870 gggtgtacgaagcaattatgttaggctacctgttaatgggctgagatttatgcagggtgcataag 7183934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 23948517 - 23948602
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||| ||||||||| ||||||||  || |||||||||| |||||||| |||||| ||||  |||  |||||||||||||||    
T  23948517 ttgtttcgttttgtttcgcttcggggtgtaagaaacaattatgttgggctaccggttaatgggctgggatt--tgcacggtgcataag 23948602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 34330187 - 34330230
Alignment:
Q  93 aatttatgcacggtgcataagaattatgcaccataaccgctccc 136  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  34330187 aatttatgcacggtgcataaggattatgcaccataaccgatccc 34330230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 18464468 - 18464391
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgt-agaaagcaattatgttaggctaccgattaatgagctgaaattta 98  Q
    ||||||||||||||| ||||||||||  ||||| || ||||||||||||| || ||||| |||||  |||| ||||||    
T  18464468 agtgttgtttcgttttgtttcgcttgaaggtgtaaggaagcaattatgttgggttaccggttaataggctggaattta 18464391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 15259969 - 15259849
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----t 116  Q
    ||||||||||||||| ||||||||||||||||||  || |||||||||| ||||| || |||||||| ||  |||||||||||||||||||| |     |    
T  15259969 agtgttgtttcgtttggtttcgcttgggggtgtatgaaacaattatgttgggctatcggttaatgagttgggatttatgcacggtgcataaggatttcct 15259870  T
Q  117 tatgcaccataaccgctcccc 137  Q
    ||||| |||||||||||||||    
T  15259869 tatgccccataaccgctcccc 15259849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 39022934 - 39023048
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----ttatg 120  Q
    |||||||||| |||||| ||||||| ||||| |||||||||||||  |||||||||||||   |||| |||||| ||||||| |||||||     |||||    
T  39022934 ttgtttcgttcagtttcacttgggg-tgtaggaagcaattatgttgagctaccgattaatagtctgagatttatacacggtgtataagaatttccttatg 39023032  T
Q  121 caccataaccgctccc 136  Q
    ||||||||||||||||    
T  39023033 caccataaccgctccc 39023048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 7614763 - 7614865
Alignment:
Q  33 gtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaattatgcaccataaccgc 132  Q
    |||| ||||||||||||| ||||  |||||||||| || |||||||| |||||| | |   |||||||||||||||||||   |||||||||||||||||    
T  7614763 gttttgtttcgcttggggatgtaagaagcaattatattgggctaccggttaatgggtttggatttatgcacggtgcataatccttatgcaccataaccgc 7614862  T
Q  133 tcc 135  Q
    |||    
T  7614863 tcc 7614865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 35448477 - 35448546
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctg 91  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||| ||| |||||||| |||||| ||||    
T  35448477 agtgttgtttcgtttggtttcgcttgggagtgtaggaagcaattaagttgggctaccggttaatgggctg 35448546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 24473062 - 24472983
Alignment:
Q  29 tttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgc 108  Q
    ||||||||  |||||||| ||||||||| ||||||||||||| | |||||| |||||| ||||| ||||||||| |||||    
T  24473062 tttcgtttgatttcgcttaggggtgtaggaagcaattatgttggactaccggttaatgggctgagatttatgcagggtgc 24472983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 45409593 - 45409508
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgc 108  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||||  ||||||  ||||||  |||  ||||||||| |||||    
T  45409593 agtgttgtttcgtttggtttcgctt-ggggtgtaggaagcaattatgttgcgctaccagttaatggactgggatttatgcagggtgc 45409508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 1672726 - 1672792
Alignment:
Q  47 gggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||| | || || ||||||| |||||||| |||||| ||||  ||||||||||||||||||||    
T  1672726 gggggtgttggaaacagttatgttgggctaccggttaatgggctgggatttatgcacggtgcataag 1672792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 28609 - 28724
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----ttatg 120  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| || |||| ||||  ||||| |||||||||| ||| |     |||||    
T  28609 ttgtttcgtttggtttcgcttgggggtgtaggaagcaattatgttgggctaccaatcaatgggctgggatttaagcacggtgcaaaaggatttccttatg 28708  T
Q  121 caccataaccgctccc 136  Q
    ||||||||||||||||    
T  28709 caccataaccgctccc 28724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 29163652 - 29163742
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaatt 117  Q
    |||||| |||| |||||  |||||||| ||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||    
T  29163652 ttgttttgtttggtttcctttgggggtataggaagcaattatgtt-ggctaccggttaatgggctgaaatttatgcacggtgcataagaatt 29163742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 25119290 - 25119208
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgc 108  Q
    ||||||||||| ||||||||||||||  ||| |||||||||||||  ||||||| |||||| ||||| ||||||||| |||||    
T  25119290 ttgtttcgtttggtttcgcttgggggcataggaagcaattatgttgagctaccggttaatgggctgagatttatgcagggtgc 25119208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 4102047 - 4101989
Alignment:
Q  54 tagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataa 112  Q
    ||||||||||||||||| | ||||||||||||| ||||  |||||||||||||||||||    
T  4102047 tagaaagcaattatgttggactaccgattaatgggctgggatttatgcacggtgcataa 4101989  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 10588782 - 10588701
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgc 108  Q
    ||||||||||| |||| |||||||||| ||| ||||||||||||| |||||||| ||||||  |||| ||||||||| |||||    
T  10588782 ttgtttcgtttggttttgcttgggggtataggaagcaattatgttgggctaccg-ttaatggactgagatttatgcagggtgc 10588701  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 32557127 - 32557192
Alignment:
Q  48 ggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||  ||||||||||||| |||||||| ||||||  |||| ||||||||| ||||||||||    
T  32557127 ggggtgtacgaagcaattatgttgggctaccggttaatggactgagatttatgcagggtgcataag 32557192  T

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Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 16276778 - 16276664
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----ttatg 120  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||| |||||| |||   |||||||||||||||||||| |     |||||    
T  16276778 ttgtttcgtttggtttcgcttgggg-tgtaggaagcaattatgttgggctaccggttaatgggcttggatttatgcacggtgcataaggatttctttatg 16276680  T
Q  121 caccataaccgctccc 136  Q
    ||||||||||||||||    
T  16276679 caccataaccgctccc 16276664  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 8719071 - 8719186
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----ttatg 120  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| | |||||||| | |||| | ||  |||||||||||||||||||| |     |||||    
T  8719071 ttgtttcgtttggtttcgcttaggggtgtaggaagcaattatgctgggctaccggtcaatgggttgggatttatgcacggtgcataaggatttccttatg 8719170  T
Q  121 caccataaccgctccc 136  Q
    ||||||||||||||||    
T  8719171 caccataaccgctccc 8719186  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 9070958 - 9071073
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaa-----ttatg 120  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||| | |||||||| | |||| | ||  |||||||||||||||||||| |     |||||    
T  9070958 ttgtttcgtttggtttcgcttaggggtgtaggaagcaattatgctgggctaccggtcaatgggttgggatttatgcacggtgcataaggatttccttatg 9071057  T
Q  121 caccataaccgctccc 136  Q
    ||||||||||||||||    
T  9071058 caccataaccgctccc 9071073  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 23700033 - 23700123
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||| ||||  |||||| |||| ||||||||    
T  23700033 agtgttgtttcgtttggtttcgcttgggggtgtaggaagcaattatgttgggcta-cggttaatgggctgggatttatccacgatgcataag 23700123  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 23718488 - 23718578
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||| ||||  |||||| |||| ||||||||    
T  23718488 agtgttgtttcgtttggtttcgcttgggggtgtaggaagcaattatgttgggcta-cggttaatgggctgggatttatccacgatgcataag 23718578  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 23736944 - 23737034
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||| ||||  |||||| |||| ||||||||    
T  23736944 agtgttgtttcgtttggtttcgcttgggggtgtaggaagcaattatgttgggcta-cggttaatgggctgggatttatccacgatgcataag 23737034  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 47729112 - 47729190
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatg 100  Q
    ||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||| |||||| ||||  |||||||    
T  47729112 agtgttgtttcgtttggtttcgtttgggggtgtaggaagcaattatgttgggctaccggttaatgggctgggatttatg 47729190  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 23756231 - 23756318
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgta-gaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||| |||||| | |||||| ||||  |||||| |||||||||||||    
T  23756231 ttgtttcgtttggtttcgcttgggggtgtagggaagcaattatgttgggctacag-ttaatgggctgggatttatccacggtgcataag 23756318  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 51681300 - 51681216
Alignment:
Q  26 ttgtttcgtttagtttcgcttgggggtgtagaaagc--aattatgttaggctaccgattaatgagctgaaatttatgcacggtgc 108  Q
    ||||||| ||| ||||||||||||||||||| ||||  ||||||||| |||||||| |||||| ||||  ||||||||| |||||    
T  51681300 ttgtttcatttggtttcgcttgggggtgtaggaagcaaaattatgttgggctaccggttaatgggctgtgatttatgcagggtgc 51681216  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 19384423 - 19384373
Alignment:
Q  94 atttatgcacggtgcataagaatt-----atgcaccataaccgctccccaa 139  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||    
T  19384423 atttatgcacggtgcataagaatttccttatgcaccataaccgctccccaa 19384373  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 4280760 - 4280697
Alignment:
Q  49 gggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataa 112  Q
    |||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  4280760 gggtgtaggaagcaattatgttgggctaccgattaatgagctagaatttatgcacggtgcataa 4280697  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 20710712 - 20710793
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcac 103  Q
    ||||||||||||||| ||||||||| || |||||| |||||||||||||   |||||| |||||| ||||| ||||||||||    
T  20710712 agtgttgtttcgtttggtttcgcttaggagtgtaggaagcaattatgttgaactaccggttaatgggctgagatttatgcac 20710793  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 36635833 - 36635778
Alignment:
Q  58 aagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||    
T  36635833 aagcaattatgttgggctaccggttaatgggctgagatttatgcacggtgcataag 36635778  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 25996047 - 25996114
Alignment:
Q  50 ggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataagaatt 117  Q
    ||||||| || |||||||||| |||||||| |||||| | || |||||||||||||||| ||||||||    
T  25996047 ggtgtaggaaacaattatgttgggctaccggttaatgggttggaatttatgcacggtgcttaagaatt 25996114  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 24024041 - 24023976
Alignment:
Q  48 ggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||  ||||||||||||| |||||||  |||||| ||||  ||||||||| ||||||||||    
T  24024041 ggggtgtaagaagcaattatgttgggctaccagttaatgggctgtgatttatgcagggtgcataag 24023976  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 43823831 - 43823896
Alignment:
Q  48 ggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||| |||||||| |||| | ||||||  ||||| ||||  ||||||||||||||||||||    
T  43823831 ggggtgtaggaagcaattgtgttggactaccggataatgggctgggatttatgcacggtgcataag 43823896  T

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Target: scaffold0009 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 203026 - 202936
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataa 112  Q
    ||||||||||||||| |||| |||| ||||||||| ||||||||||||| |||||||| ||||||  |||  |||| ||||||||||||||    
T  203026 agtgttgtttcgtttggttttgcttaggggtgtaggaagcaattatgttgggctaccggttaatggactgggatttgtgcacggtgcataa 202936  T

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Target: scaffold0097 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 14551 - 14632
Alignment:
Q  22 agtgttgtttcgtttagtttcgcttgggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcac 103  Q
    ||||||||||||||| ||||||||| || |||||| |||||||||||||   |||||| |||||| ||||| ||||||||||    
T  14551 agtgttgtttcgtttggtttcgcttaggagtgtaggaagcaattatgttgaactaccggttaatgggctgagatttatgcac 14632  T

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Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 35841 - 35786
Alignment:
Q  58 aagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    ||||||||||||| |||||||  |||||||||||| ||||||||| ||||||||||    
T  35841 aagcaattatgttgggctaccagttaatgagctgagatttatgcaaggtgcataag 35786  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 119870 - 119935
Alignment:
Q  48 ggggtgtagaaagcaattatgttaggctaccgattaatgagctgaaatttatgcacggtgcataag 113  Q
    |||||||| |||||||||||||| |||||||  |||||| ||||  |||||||||  |||||||||    
T  119870 ggggtgtacaaagcaattatgttgggctaccagttaatgggctgggatttatgcagagtgcataag 119935  T

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