View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5704_low_20 (Length: 236)
Name: NF5704_low_20
Description: NF5704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5704_low_20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 37078250 - 37078470
Alignment:
| Q |
16 |
ataatccatcataatctggaaaatgaagctaataaattaaaacatttcttgaactatataggttttagtattattaatttcgtccttttaaattagtatt |
115 |
Q |
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| T |
37078250 |
ataatccatcataatctgaaaaatgaagctaataaattaaaacatttcttgaactatataggttttagtattattaatttcgtccttttaaattagtatt |
37078349 |
T |
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| Q |
116 |
ttaaccttatatttgcgatcaatttcttatgaaattcattgctaattgtataactaggggccagtcatgattgactcaaataagtctcatggcgggcgtt |
215 |
Q |
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| T |
37078350 |
ttaaccttatatttgcgatcaatttcttatgaaattcattgctaattgtataactaggggccagtcatgattgactcaaataagtctcatggcgggcgtt |
37078449 |
T |
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| Q |
216 |
tactttgccgacctcacttag |
236 |
Q |
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| T |
37078450 |
tactttgccaacctcacttag |
37078470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 37063660 - 37063772
Alignment:
| Q |
72 |
tataggttttagtattattaatttcgtccttttaaattagtattttaaccttatatttgcgatcaat--------ttcttatgaaattcattgctaattg |
163 |
Q |
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| T |
37063660 |
tatatgttttggtattattaatttcatctgtttaaattagtattttaaccttataattatgatcaataagtgctaggcttatgaaattcattgctaattg |
37063759 |
T |
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| Q |
164 |
tataactaggggc |
176 |
Q |
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| T |
37063760 |
tataactatgggc |
37063772 |
T |
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